flowCore specifications


Unique identifier OMICS_05596
Name flowCore
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.40.3
Stability Stable
Maintained Yes



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  • person_outline Mike Jiang <>

flowCore article

flowCore citations

PMCID: 3060130

[…] gates. the gating-ml specification is increasingly supported by both commercial software vendors (e.g., treestar inc., makers of flowjo, cytobank inc.) as well as open source software, such as the flowcore/flowutils [6] r/bioconductor [7] packages. with these reference implementations now available, the gating-ml candidate recommendation is under revision as a first version of the official […]

PMCID: 2798117

[…] language. gates were automatically extracted from the flowjo output using an in-house xml parsing script based on the r xml 2.3.0 library. these gates were applied to the raw fcs files using the r flowcore 1.8.3 library. repeatability r 2 values are estimated using [var(x) − ∑i(x i 1 − x i 2)2]/var(x) where (x i 1)i = 1 n and (x i 2)i = 1 n designate the first and second sets of replicates (n […]

flowCore institution(s)
Life Sciences Department, Computational Biology Program, Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA; EA SeRAIC INSERM, IRISA – Symbiose, Université de Rennes, Rennes, France; Terry Fox Laboratory, British Columbia Cancer Agency Research Centre, Vancouver, BC, Canada; AdBrite Inc, San Francisco, CA, USA; BD Biosciences, Research Triangle Park, NC, USA
flowCore funding source(s)
This work was supported by NIH grant EB005034, NIH grant R01 EB008400, and the Michael Smith Foundation for Health Research.

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