flowCyBar specifications

Information


Unique identifier OMICS_05597
Name flowCyBar
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.16.0
Stability Stable
Requirements
methods, gplots, R(>=3.0.0), vegan
Maintained Yes

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Documentation


flowCyBar in publications

 (3)
PMCID: 5770544
PMID: 29359193
DOI: 10.1128/mSphere.00564-17

[…] temperature were altered for short time periods. the various structures of the amc and cmc were monitored by flow cytometry at the single-cell level, the resulting data were evaluated using the tool flowcybar (see materials and methods), and stability properties were calculated according to the proposed novel workflow., as proposed by grimm and wissel (), first the ecological situation must […]

PMCID: 5663091
PMID: 29084543
DOI: 10.1186/s12934-017-0793-7

[…] 6 °c for 25 min and 5 min, respectively. the cell pellets were stored at − 20 °c. cytometric data were evaluated using flowjo v10.0.8r1 with the engine v3.04910 (flowjo, llc, ashland, usa) and flowcybar [] using the r package flowcybar (https://www.bioconductor.org/packages/release/bioc/html/flowcybar.html)., cell counting was performed by adding 1-µm yellow-green fluorescent fluospheres […]

PMCID: 5084791
PMID: 26909672
DOI: 10.1002/eji.201646297

[…] of the microbiotic community were detectable (fig. a). for quantitative assessment of the changes measured by flow cytometry between the different samples, we used the cytometric barcoding (flowcybar) approach for which we defined a gate template composed of all gates occurring in any of the samples of the study (fig. a, right panel and supporting information fig. 2 for gating […]


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