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flowCyBar specifications

Information


Unique identifier OMICS_05597
Name flowCyBar
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.16.0
Stability Stable
Requirements
methods, gplots, R(>=3.0.0), vegan
Maintained Yes

Versioning


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Documentation


flowCyBar citations

 (3)
call_split

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry

2018
PMCID: 5770544
PMID: 29359193
DOI: 10.1128/mSphere.00564-17
call_split See protocol

[…] n of cells per gate of 2.94%. The variation in samples over time is recorded in a movie () and shown for exemplary samples (, section S2.6), and values were calculated by using the bioinformatic tool flowCyBar (, section S2.7; http://www.bioconductor.org/packages/release/bioc/html/flowCyBar.html [, ]). The data clearly show how the community changes in response to the applied perturbations in the […]

library_books

Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F420 autofluorescence

2017
Microb Cell Fact
PMCID: 5663091
PMID: 29084543
DOI: 10.1186/s12934-017-0793-7

[…] ,000g, 6 °C for 25 min and 5 min, respectively. The cell pellets were stored at − 20 °C. Cytometric data were evaluated using FlowJo v10.0.8r1 with the Engine v3.04910 (FlowJo, LLC, Ashland, USA) and flowCyBar [] using the R package flowCyBar (https://www.bioconductor.org/packages/release/bioc/html/flowCyBar.html). […]

call_split

Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics

2014
Front Microbiol
PMCID: 4044693
PMID: 24926290
DOI: 10.3389/fmicb.2014.00273
call_split See protocol

[…] ed step by step procedure and ready-to-use macros for the CyBar procedure are provided in Koch et al. () and were recently published as R package on the Bioconductor platform (www.bioconductor.com as flowCyBar, http://www.bioconductor.org/packages/devel/bioc/html/flowCyBar.html). The link is also available under the QR-Code provided in Figure . […]

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