FlowerPower specifications

Information


Unique identifier OMICS_13087
Name FlowerPower
Interface Web user interface
Restrictions to use None
Input data A seed sequence, a specified database from which putative homologs will be selected, and user-selected alignment quality control criteria (coverage and percent identity cutoffs)
Output data Subfamily-HMM based alignment and a realignment of the sequences, functional subfamily, subfamily HMMs
Programming languages Perl
Computer skills Basic
Stability Stable
Source code URL https://codeload.github.com/berkeleyphylogenomics/flowerpower/zip/master
Maintained No

Maintainer


This tool is not maintained anymore.

Information


Unique identifier OMICS_13087
Name FlowerPower
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A seed sequence, a specified database from which putative homologs will be selected, and user-selected alignment quality control criteria (coverage and percent identity cutoffs)
Output data subfamily-HMM based alignment and a realignment of the sequences, functional subfamily, subfamily HMMs
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Source code URL https://codeload.github.com/berkeleyphylogenomics/flowerpower/zip/master
Maintained No

Versioning


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Maintainer


This tool is not maintained anymore.

Publication for FlowerPower

FlowerPower institution(s)
Department of BioEngineering, University of California, Berkeley, CA, USA; UC Berkeley and UCSF Joint Graduate Group in Bioengineering, University of California, CA, USA
FlowerPower funding source(s)
Presidential Early Career Award for Scientists and Engineers (PECASE) Grant #0238311 from the National Science Foundation, Grant #R01 HG002769-01 from the National Institutes of Health

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