flowFP statistics

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flowFP specifications

Information


Unique identifier OMICS_05599
Name flowFP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.38.0
Stability Stable
Requirements
methods, stats, graphics, Biobase, stats4, grDevices, R(>=2.10), RUnit, BiocGenerics(>=0.1.6), flowCore, flowViz
Maintained Yes

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Publication for flowFP

flowFP in publications

 (3)
PMCID: 5214528
PMID: 28054583
DOI: 10.1038/srep39710

[…] genome viewer (igv)., fcs files were normalized using the method based on landmark registration. a probability binning algorithm was applied on the normalized dataset as described previously, using flowfp implementation in r package with the following modification – the algorithm preferentially split the bins above the fluorescence background threshold (the threshold is set for each channel […]

PMCID: 5005935
PMID: 27630823
DOI: 10.3389/fonc.2016.00188

[…] cover with mahalanobis distance as the distance between clusters; and in figure b, the dissimilarity between samples is computed by the earth mover’s distance (emd) (). to compute emd, we used the flowfp package in bioconductor to generate fingerprints of flow cytometry data, and then computed emd by solving the minimum sum assignment problem using the clue package. upgma does a reasonable job […]

PMCID: 2821639
PMID: 20169120
DOI: 10.1155/2009/461763

[…] of biological changes (e.g., proportion of cells within a subpopulation) that correlate with a disease in order to predict the status (e.g., healthy/diseased) of a patient. rogers and holyst present flowfp, a bioconductor package for fingerprinting flow cytometric data. flowfp provides tools to transform raw fcm data into a form suitable for direct input into conventional statistical analysis […]


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flowFP institution(s)
Department of Pathology and Laboratory Medicine, School of Medicine, University of Pennsylvania, Philadelphia, PA, USA

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