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Protocols

flowFP specifications

Information


Unique identifier OMICS_05599
Name flowFP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.38.0
Stability Stable
Requirements
methods, stats, graphics, Biobase, stats4, grDevices, R(>=2.10), RUnit, BiocGenerics(>=0.1.6), flowCore, flowViz
Maintained Yes

Versioning


No version available

Documentation


Publication for flowFP

flowFP citations

 (3)
library_books

Common Variable Immunodeficiency patients with a phenotypic profile of immunosenescence present with thrombocytopenia

2017
Sci Rep
PMCID: 5214528
PMID: 28054583
DOI: 10.1038/srep39710

[…] FCS files were normalized using the method based on landmark registration. A probability binning algorithm was applied on the normalized dataset as described previously, using flowFP implementation in R package with the following modification – the algorithm preferentially split the bins above the fluorescence background threshold (the threshold is set for each channel sepa […]

library_books

Immunophenotype Discovery, Hierarchical Organization, and Template Based Classification of Flow Cytometry Samples

2016
PMCID: 5005935
PMID: 27630823
DOI: 10.3389/fonc.2016.00188

[…] ge cover with Mahalanobis distance as the distance between clusters; and in Figure B, the dissimilarity between samples is computed by the earth mover’s distance (EMD) (). To compute EMD, we used the flowFP package in Bioconductor to generate fingerprints of flow cytometry data, and then computed EMD by solving the minimum sum assignment problem using the clue package. UPGMA does a reasonable job […]

call_split

Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics

2014
Front Microbiol
PMCID: 4044693
PMID: 24926290
DOI: 10.3389/fmicb.2014.00273
call_split See protocol

[…] FlowFP (Rogers and Holyst, ) is a software package of the Bioconductor platform (Gentleman et al., ). Thereby, the complete analyzing procedure can be performed in R. FlowFP was first developed for ha […]

Citations

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flowFP institution(s)
Department of Pathology and Laboratory Medicine, School of Medicine, University of Pennsylvania, Philadelphia, PA, USA

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