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flowMap specifications


Unique identifier OMICS_05600
Name flowMap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.18.0
Stability Stable
BiocStyle, knitr, R(>=3.0.1), ade4(>=1.5-2), doParallel(>=1.0.3), abind(>=1.4.0), reshape2(>=1.2.2), scales(>=0.2.3), Matrix(>=1.1-4), methods(>=2.14)
Maintained Yes


No version available


flowMap citations


Cell type discovery and representation in the era of high content single cell phenotyping

BMC Bioinformatics
PMCID: 5763450
PMID: 29322913
DOI: 10.1186/s12859-017-1977-1

[…] arison of datasets to match equivalent cell types identified in independent experiments. For example, our group has described the implementation and use of the Friedman-Rafsky statistical test in the FlowMap-FR tool for cross-sample cell population matching from flow cytometry data []. This type of approach could be explored for comparing multivariate expression profiles to determine how similar t […]


Preclinical 4D flow magnetic resonance phase contrast imaging of the murine aortic arch

PLoS One
PMCID: 5678712
PMID: 29117252
DOI: 10.1371/journal.pone.0187596

[…] nducted with an SA Instruments 1030 (Stony Brook, NY 11790) monitoring device. A respiration and ECG gated balanced four point (Hadamard scheme) 3D cine phase contrast sequence from the manufacturer (FLOWMAP, Bruker BioSpin Ettlingen, Germany) was used as a framework. Unlike commonly done in human phase contrast imaging the velocity encodings are acquired subsequently in different heartbeats in or […]


Effects of a compound from the group of substituted thiadiazines with hypothermia inducing properties on brain metabolism in rats, a study in vivo and in vitro

PLoS One
PMCID: 5498073
PMID: 28678857
DOI: 10.1371/journal.pone.0180739

[…] hod was used with parameters of a pulse sequence TE = 3.2 ms, TR = 15 ms (three-dimensional vessels image FOV 4×4×4 cm and a matrix size of 256×256×128 dots). The blood flow rate was determined using FLOWMAP method (flow-compensated gradient echo method) with the pulse sequence parameters TE = 6 ms, TR = 20 ms (1 mm thick slices with a field of view of 4×4 cm and a matrix size 256×256 dots). […]


Cardiac 4D phase contrast CMR at 9.4 T using self gated ultra short echo time (UTE) imaging

J Cardiovasc Magn Reson
PMCID: 5374606
PMID: 28359292
DOI: 10.1186/s12968-017-0351-9

[…] and the flow phantom, acting as a compressible medium and effectively homogenizing the flow. As gold-standard a vendor supplied Cartesian three-dimensional FLASH based flow mapping imaging sequence (Flowmap, Bruker BioSpin, Ettlingen, Germany) was used and the results were compared to those of the 4D PC UTE sequence. Applying a four-point Hadamard encoding scheme in both sequences, all three spat […]


Mapping cell populations in flow cytometry data for cross‐sample comparison using the Friedman–Rafsky test statistic as a distance measure

PMCID: 5014134
PMID: 26274018
DOI: 10.1002/cyto.a.22735

[…] FlowMap‐FR was applied to two real flow cytometry data sets to evaluate its performance in mapping cell populations across multiple real flow cytometry samples. The first evaluation investigated the a […]


Velocity mapping of the aortic flow at 9.4 T in healthy mice and mice with induced heart failure using time resolved three dimensional phase contrast MRI (4D PC MRI)

PMCID: 4515240
PMID: 25381179
DOI: 10.1007/s10334-014-0466-z

[…] ice thickness: 1 mm, MTX: 256 × 256). Blood flow measurements were performed using a three-dimensional ECG- and respiration-triggered FLASH sequence with bipolar gradients for flow velocity encoding (Flowmap, Bruker BioSpin, Ettlingen, Germany). Applying a four-point Hadamard encoding scheme, all three spatial velocity components were encoded simultaneously [, ]. The sequence parameters were TE/TR […]

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