flowMap statistics

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flowMap specifications

Information


Unique identifier OMICS_05600
Name flowMap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.18.0
Stability Stable
Requirements
BiocStyle, knitr, R(>=3.0.1), ade4(>=1.5-2), doParallel(>=1.0.3), abind(>=1.4.0), reshape2(>=1.2.2), scales(>=0.2.3), Matrix(>=1.1-4), methods(>=2.14)
Maintained Yes

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flowMap in publications

 (7)
PMCID: 5763450
PMID: 29322913
DOI: 10.1186/s12859-017-1977-1

[…] of datasets to match equivalent cell types identified in independent experiments. for example, our group has described the implementation and use of the friedman-rafsky statistical test in the flowmap-fr tool for cross-sample cell population matching from flow cytometry data []. this type of approach could be explored for comparing multivariate expression profiles to determine how similar […]

PMCID: 5678712
PMID: 29117252
DOI: 10.1371/journal.pone.0187596

[…] with an sa instruments 1030 (stony brook, ny 11790) monitoring device. a respiration and ecg gated balanced four point (hadamard scheme) 3d cine phase contrast sequence from the manufacturer (flowmap, bruker biospin ettlingen, germany) was used as a framework. unlike commonly done in human phase contrast imaging the velocity encodings are acquired subsequently in different heartbeats […]

PMCID: 5498073
PMID: 28678857
DOI: 10.1371/journal.pone.0180739

[…] was used with parameters of a pulse sequence te = 3.2 ms, tr = 15 ms (three-dimensional vessels image fov 4×4×4 cm and a matrix size of 256×256×128 dots). the blood flow rate was determined using flowmap method (flow-compensated gradient echo method) with the pulse sequence parameters te = 6 ms, tr = 20 ms (1 mm thick slices with a field of view of 4×4 cm and a matrix size 256×256 dots)., […]

PMCID: 5374606
PMID: 28359292
DOI: 10.1186/s12968-017-0351-9

[…] and the flow phantom, acting as a compressible medium and effectively homogenizing the flow. as gold-standard a vendor supplied cartesian three-dimensional flash based flow mapping imaging sequence (flowmap, bruker biospin, ettlingen, germany) was used and the results were compared to those of the 4d pc ute sequence. applying a four-point hadamard encoding scheme in both sequences, all three […]

PMCID: 5014134
PMID: 26274018
DOI: 10.1002/cyto.a.22735

[…] on identifying cell populations in individual fcm samples, very few have addressed how the identified cell populations can be matched across samples for comparative analysis. this article presents flowmap‐fr, a novel method for cell population mapping across fcm samples. flowmap‐fr is based on the friedman–rafsky nonparametric test statistic (fr statistic), which quantifies the equivalence […]


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