flowMerge specifications


Unique identifier OMICS_05605
Name flowMerge
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 2.28.0
Stability Stable
methods, stats, graphics, snow, utils, foreach, graph, Rgraphviz, rrcov, flowCore, feature, flowClust
Maintained Yes


No version available



  • person_outline Raphaël Gottardo

Publication for flowMerge

flowMerge citations


Single and multi subject clustering of flow cytometry data for cell type identification and anomaly detection

BMC Med Genomics
PMCID: 4980779
PMID: 27510222
DOI: 10.1186/s12920-016-0201-x

[…] s. The staining panel contains antibodies to surface markers and intracellular proteins.Additionally, we compared our method against four well-known algorithms in the field: FLAME [], SamSpectral [], flowMerge [], and flowMeans []. […]


Misty Mountain clustering: application to fast unsupervised flow cytometry gating

BMC Bioinformatics
PMCID: 2967560
PMID: 20932336
DOI: 10.1186/1471-2105-11-502

[…] owledge Drs. B. Hartman and J. Seto for providing the barcoding FCM data, Dr. German Nudelman for making the program available on the web and Dr. Yongchao Ge for analyzing FCM data with flowClust and flowMerge. We are grateful for Prof. Ryan Brinkman for providing access to the GvHD flow cytometry data sets and to Prof. Hans Snoeck for providing the OP9 dataset. This work from the Program for Rese […]

flowMerge institution(s)
Computational Biology Unit, Clinical Research Institute of Montreal, Montreal, QC, Canada

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