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FlowRepository specifications

Information


Unique identifier OMICS_05620
Name FlowRepository
Restrictions to use None
Maintained Yes

Documentation


Maintainer


  • person_outline Ryan R. Brinkman

Additional information


Login required for submission. A FlowRepository R Interface is available here http://bioconductor.org/packages/devel/bioc/html/FlowRepositoryR.html https://www.bioconductor.org/packages/devel/bioc/vignettes/FlowRepositoryR/inst/doc/HowTo-FlowRepositoryR.pdf

Publication for FlowRepository

FlowRepository citations

 (13)
library_books

A Method for the Interpretation of Flow Cytometry Data Using Genetic Algorithms

2018
J Pathol Inform
PMCID: 5937296
PMID: 29770255
DOI: 10.4103/jpi.jpi_76_17

[…] FCS files were downloaded from dataset #FR-FCM-ZZYA (AML, FlowCAP II), currently maintained in the public website www.flowrepository.org.[] The dataset identifies each patient with a number and the assignment “normal” or “AML.” For each patient, there are eight FCS files, which correspond to acquisitions from eight s […]

library_books

QFMatch: multidimensional flow and mass cytometry samples alignment

2018
Sci Rep
PMCID: 5818510
PMID: 29459702
DOI: 10.1038/s41598-018-21444-4

[…] The datasets generated during and/or analysed during the current study are available in the FlowRepository and Cytobank:https://flowrepository.org/id/FR-FCM-ZY3B, https://www.cytobank.org/nolanlab/reports/Levine2015.html (CyTOF AML PhenoGraph manually gated CD34 x CD45 AML blast populations, […]

library_books

Prime and Boost Vaccination Elicit a Distinct Innate Myeloid Cell Immune Response

2018
Sci Rep
PMCID: 5814452
PMID: 29449630
DOI: 10.1038/s41598-018-21222-2

[…] of the dynamic of vaccine-induced immune responses or the study of vaccines modes of action. To make these complex data fully accessible to the scientific community, we publicly released them on the FlowRepository database and the Cytobank platform. We also created a website with interactive representations. We provide evidence of the phenotypic diversity of innate myeloid cells and of the qualit […]

library_books

Comparison of CyTOF assays across sites: Results of a six center pilot study

2018
J Immunol Methods
PMCID: 5805584
PMID: 29174717
DOI: 10.1016/j.jim.2017.11.008

[…] D14-Gd160, CD19-Nd142, CD4-Nd145, CD8a-Nd146, CD16-Nd148, CD20-Sm147, CD11c-Tb159, CD45RA-Tm169, HLA-DR-Yb174, and CD56-Yb176. All output results for SPADE3 and for Cytofkit have been uploaded to the FlowRepository record as ZIPPED files. […]

library_books

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry

2018
PMCID: 5770544
PMID: 29359193
DOI: 10.1128/mSphere.00564-17

[…] Cytometric data were uploaded into the Flow Repository database (https://flowrepository.org/) under accession number FR-FCM-ZZTV (http://flowrepository.org/id/RvFrs5hE0ALnokont7Z8GiOEZTIBr93jvwBFQeOcLxlDPSTRVvhdtB7ZiOJ1oi3p). Version 1.0 of the R script implementing the pr […]

library_books

A functional connection between dyskerin and energy metabolism

2017
Redox Biol
PMCID: 5684492
PMID: 29132127
DOI: 10.1016/j.redox.2017.11.003

[…] MRE and MitoSOX Red) signal following definition of forward Scattering (FSC) and Side Scattering (SSC) parameters, used to identify cells and exclude debris. Flow cytometry raw data were deposited in flowrepository under the accessions: FR-FCM-ZY2Q for TMRE, FR-FCM-ZY2N for H2DCFDA; FR-FCM-ZY2X for MitoSOX and FR-FCM-ZY2P for Propidium iodide. […]

Citations

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FlowRepository institution(s)
Terry Fox Laboratory, BC Cancer Agency, Vancouver, BC, Canada; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada; Cytobank Inc., Mountain View, CA, USA; Department of Medical Genetics University of British Columbia, Vancouver BC, Canada
FlowRepository funding source(s)
Supported by the International Society for Advancement of Cytometry, the Wallace H. Coulter Foundation, the Terry Fox Foundation, and the Terry Fox Research Institute.

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