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flowUtils specifications

Information


Unique identifier OMICS_05614
Name flowUtils
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.44.0
Stability Stable
Requirements
methods, stats, Biobase, utils, RUnit, corpcor, graph, XML, R(>=2.2.0), flowCore(>=1.32.0), gatingMLData
Maintained Yes

Versioning


No version available

Documentation


flowUtils citations

 (3)
call_split

Managing Multi center Flow Cytometry Data for Immune Monitoring

2015
Cancer Inform
PMCID: 4463798
PMID: 26085786
DOI: 10.4137/CIN.S16346
call_split See protocol

[…] for interacting with the ReFlow server. In addition, there are three helper libraries independent of the ReFlow system used for interacting with FCS files: FlowIO, for reading and writing FCS files; FlowUtils, containing utility functions for transforming and compensating flow cytometry data; and FlowStats, which contains the statistical functions used for clustering multi-dimensional flow cytome […]

library_books

Flow Cytometry Bioinformatics

2013
PLoS Comput Biol
PMCID: 3867282
PMID: 24363631
DOI: 10.1371/journal.pcbi.1003365

[…] formally describe gates and related data (scale) transformations . The draft recommendation version of Gating-ML was approved by ISAC in 2008, and it is partially supported by tools like FlowJo, the flowUtils library in R/Bioconductor, and FlowRepository . It supports rectangular gates, polygon gates, convex polytopes, ellipsoids, decision trees, and Boolean collections of any of the other types […]

library_books

Flow cytometry data standards

2011
BMC Res Notes
PMCID: 3060130
PMID: 21385382
DOI: 10.1186/1756-0500-4-50

[…] The Gating-ML specification is increasingly supported by both commercial software vendors (e.g., TreeStar Inc., makers of FlowJo, Cytobank Inc.) as well as open source software, such as the flowCore/flowUtils [] R/BioConductor [] packages. With these reference implementations now available, the Gating-ML Candidate Recommendation is under revision as a first version of the official ISAC standard f […]

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