flowWorkspace specifications


Unique identifier OMICS_05616
Name flowWorkspace
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 3.28.2
Stability Stable
methods, stats, RColorBrewer, parallel, graphics, BiocGenerics, Biobase, utils, testthat, stats4, grDevices, lattice, tools, Rcpp, dplyr, scales, data.table, knitr, matrixStats, graph, latticeExtra, RBGL, Rgraphviz, stringr, XML, gridExtra, flowViz, flowWorkspaceData, ggcyto, R(>=2.16.0), flowCore(>=1.45.14), ncdfFlow(>=2.25.4)
Maintained Yes


No version available


Publication for flowWorkspace

flowWorkspace citations


CymeR: cytometry analysis using KNIME, docker and R

PMCID: 5870801
PMID: 27998935
DOI: 10.1093/bioinformatics/btw707

[…] timized for operations such as manual gating, which we do not try to supplant. Thus, we provide functions to import and export data to and from FlowJo and Cytobank () through a graphical front-end to flowWorkspace () and CytoML, respectively. […]


Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium

Sci Rep
PMCID: 4748244
PMID: 26861911
DOI: 10.1038/srep20686
call_split See protocol

[…] fying several populations. Gating schemes for all panels can be found in , and live visualization of the manual (and automated) gates for each sample can be found online at the ImmuneSpace portal.The flowWorkspace (v 3.15.17) package was used to import the manually gated data into R for further analysis. Manual gate import scripts can be found online at ImmuneSpace. Of the nine centers, one center […]

flowWorkspace institution(s)
Fred Hutchinson Cancer Research Center, Seattle, WA, USA

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