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Protocols

FluGenome specifications

Information


Unique identifier OMICS_08015
Name FluGenome
Restrictions to use None
Maintained Yes

Taxon


  • Viruses
    • Influenza A virus
    • Influenza A virus (A/Puerto Rico/8/1934(H1N1))
    • Influenza B virus

Maintainer


  • person_outline FluGenome

Publication for FluGenome

FluGenome citations

 (4)
library_books

Sensitive Detection and Simultaneous Discrimination of Influenza A and B Viruses in Nasopharyngeal Swabs in a Single Assay Using Next Generation Sequencing Based Diagnostics

2016
PLoS One
PMCID: 5033603
PMID: 27658193
DOI: 10.1371/journal.pone.0163175

[…] d aligned using the Vector NTI Advance package (v·11·5·2, Life Technologies, Grand Island, NY). The serotype and genotype according to the genetic lineage of influenza A viruses were determined using FluGenome []. […]

call_split

Pathogenicity of Highly Pathogenic Avian Influenza Virus H5N1 in Naturally Infected Poultry in Egypt

2015
PLoS One
PMCID: 4427178
PMID: 25962145
DOI: 10.1371/journal.pone.0120061
call_split See protocol

[…] equence. The reliability of the internal branches was assessed by the p-distance substitution model and 1000 bootstrap replications. The HA and NS genotypes was determined using the Influenza A Virus FluGenome web server, (http://www.flugenome.org/) []. […]

library_books

Nanomicroarray and Multiplex Next Generation Sequencing for Simultaneous Identification and Characterization of Influenza Viruses

2015
PMCID: 4344273
PMID: 25694248
DOI: 10.3201/eid2103.141169

[…] pH1N1 or H3N2v viruses (), which suggests that these viruses are not H3N2v (,). The genotype of 24 influenza A(H3N2) viruses was determined as [A,D,B,3A,A,2A,B,1A] by using FluGenotyping (http://www.flugenome.org), which indicates that the same lineage virus is circulating in this region. The HA genes from most samples shared very high identity with A/Boston/DOA2–206/2013(H3N2) and the NA genes w […]

call_split

Prospective of Genomics in Revealing Transmission, Reassortment and Evolution of Wildlife Borne Avian Influenza A (H5N1) Viruses

2011
Curr Genomics
PMCID: 3219842
PMID: 22547954
DOI: 10.2174/138920211797904052
call_split See protocol

[…] should be developed.In addition, several online or stand-alone computer programs have been developed to facilitate the genotyping and identification of reassortant influenza viruses [-]. Among them, FluGenome [], the method proposed by Suzuki (2010) [], GiRaF [] and FluReF [] are based on phylogenetic trees but employ different methods to determine the topological differences among the trees cons […]

Citations

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FluGenome institution(s)
Department of Biology, Department of Computer Science, University of Nebraska at Omaha, Omaha, NE, USA; Influenza Division, Centers for Disease Control and Prevention, Atlanta, GA, USA

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