FluxModeCalculator specifications

Information


Unique identifier OMICS_10894
Name FluxModeCalculator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
Parallelization OpenMP
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Willems Van Djik K. <>

Publication for FluxModeCalculator

FluxModeCalculator in publication

PMCID: 5371735
PMID: 28265005
DOI: 10.15252/msb.20167028

[…] of all the so‐called elementary flux modes., elementary flux modes (efm) are defined as the minimal reaction sets that are able to operate at steady state (schuster & hilgetag, ). we used the fluxmodecalculator algorithm (van klinken & willems van dijk, ) to exhaustively estimate all possible efms that can potentially support growth of e. coli when growing in a glucose versus acetate […]


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FluxModeCalculator institution(s)
Department of Human Genetics, LUMC, Leiden, Netherlands; Einthoven Laboratory for Experimental Vascular Medicine, LUMC, Leiden, Netherlands; Department of Medicine; Division of Endocrinology, LUMC, Leiden, Netherlands
FluxModeCalculator funding source(s)
This work was supported by grants from the Netherlands Consortium for Systems Biology (NCSB), the Center of Medical Systems Biology (CMSB), the European Network for Genetic and Genomic Epidemiology (ENGAGE), the Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) 2.0 and CardioVascular Research Netherlands (CVON-ENERGISE).

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