Fluxomic analysis software tools and databases

Fluxomics applications

In our modern 'omics era, metabolic flux analysis (fluxomics) represents the physiological counterpart of its siblings transcriptomics, proteomics and metabolomics. Fluxomics integrates in vivo measurements of metabolic fluxes with stoichiometric network models to allow the…

Fluxomic analysis software tools and databases

Most Recent Tools

F2C2
Desktop

F2C2 Fast flux coupling calculator

Computes the flux coupling for every pair of reactions in a network. F2C2 is a…

Computes the flux coupling for every pair of reactions in a network. F2C2 is a software which outperforms previous analysis methods by orders of magnitude. It is based on two main principles: (i) it…

Coordinate…
Desktop

Coordinate Hit-and-Run with Rounding

Converges to a uniform stationary sampling distribution. CHRR is based on the…

Converges to a uniform stationary sampling distribution. CHRR is based on the provably efficient hit-and-run random walk and crucially uses a preprocessing step to round the anisotropic flux set. It…

integrated…
Desktop

integrated flux-balance analysis

Predicts different and more accurate phenotypes than the ordinary differential…

Predicts different and more accurate phenotypes than the ordinary differential equation (ODE) model for 85 of 334 single gene perturbation simulations, as well for the wild-type simulations. iFBA was…

EMU Generator
Desktop

EMU Generator

Significantly decreases, with flux coupling, the computational burden of…

Significantly decreases, with flux coupling, the computational burden of metabolic flux analysis (MFA) when applied to large-scale metabolic models. EMU Generator was applied to a previously…

Most Popular Tools

fastcore
Desktop

fastcore

A generic algorithm for reconstructing context-specific metabolic network…

A generic algorithm for reconstructing context-specific metabolic network models from global genome-wide metabolic network models such as Recon X. fastcore takes as input a core set of reactions that…

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