Fluxomic analysis software tools and databases

In our modern 'omics era, metabolic flux analysis (fluxomics) represents the physiological counterpart of its siblings transcriptomics, proteomics and metabolomics. Fluxomics integrates in vivo measurements of metabolic fluxes with stoichiometric…

Fluxomics applications

Fluxomic analysis software tools and databases

Most Recent Tools

CORDA
Desktop

CORDA Cost Optimization Reaction Dependency Assessment

Constructs genome scale models in a tissue-specific manner. CODRA based on a…

Constructs genome scale models in a tissue-specific manner. CODRA based on a method that identifies the dependency of desirable reactions on undesirable reactions. It returns a concise, functional…

RegrEx
Desktop

RegrEx Regularized context-specific model Extraction method

Extracts a context-specific model and provides a flux distribution that…

Extracts a context-specific model and provides a flux distribution that maximizes correlation between data. RegrEx is based on regularized least squares optimization to automatically run without…

BacArena
Desktop

BacArena

Allows to analyze microbial metabolism where individual-based modeling has been…

Allows to analyze microbial metabolism where individual-based modeling has been employed to examine complex dynamics about interacting organisms. BacArena extends the integration of flux balance…

jQMM
Desktop

jQMM JBEI Quantitative Metabolic Modeling

Provides a method to calculate fluxes for genome-scale models. jQMM is an…

Provides a method to calculate fluxes for genome-scale models. jQMM is an open-source modular library for modelling metabolism. This library includes algorithms to measure and predict internal…

Most Popular Tools

fastcore
Desktop

fastcore

A generic algorithm for reconstructing context-specific metabolic network…

A generic algorithm for reconstructing context-specific metabolic network models from global genome-wide metabolic network models such as Recon X. fastcore takes as input a core set of reactions that…

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