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FLYA specifications

Information


Unique identifier OMICS_03407
Name FLYA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for FLYA

FLYA in publications

 (5)
PMCID: 5786013
PMID: 29374165
DOI: 10.1038/s41467-017-02592-z

[…] of approximately 5% (fig. , supplementary figure ).fig. 3, to test the performance of 4d-chains relative to existing assignment programs, we performed calculations using a popular assignment method, flya, for all protein targets used in the current study. while 4d-chains relies exclusively on the combination of 4d-hcnh tocsy and 4d-hcnh noesy, the flya algorithm is designed to combine peak […]

PMCID: 5727386
PMID: 29235475
DOI: 10.1038/s41467-017-02313-6

[…] h(ncdcg)cb (trp), (hb)cb(cgcd)hd, (hb)cb(cgcc-tocsy)har. noe distance restraints were derived from 15n and 13c-separated noesy spectra. in addition to the manual assignment strategy, we employed the flya automated resonance assignment algorithm for backbone and side chain assignment. the 1h/13c/15n resonance assignments were complete for all ch_n groups and the backbone nh groups. about 90% […]

PMCID: 5408130
PMID: 28487762
DOI: 10.1016/j.csbj.2017.04.001

[…] are also available, such as pine and pine-sparky, which is included in the new version of sparky (nmrfam-sparky) , , mars , unio (assembly of match/ascan/candid/atnos algorithms) , , , , and flya , which is partially powered by the garant algorithm . the basic concept of the automated signal assignment process is matching peaks between experimentally observed and expected ones, […]

PMCID: 5133543
PMID: 27910948
DOI: 10.1038/srep38312

[…] side-chain resonances were assigned with the help of an automated approach based on noesy spectra as well as the spectra used for the manual side-chain resonance assignments. we employed the flya automated assignment algorithm, which has previously been shown to provide assignments of in vitro spectra without requiring a specific set of spectra for the sequential assignment. […]

PMCID: 3794610
PMID: 23921634
DOI: 10.1093/nar/gkt665

[…] glycosidic torsion angle χ ()., whereas a large variety of automatic chemical shift assignment algorithms were developed for proteins (,), for example garant (), autoassign (), mars (), pine () and flya (), so far no comparably general, automated assignment approach was developed for rna. the recently developed rna-pairs algorithm () is able to automatically assign imino resonances of rnas. […]


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FLYA institution(s)
Institute of Biophysical Chemistry, Center for Biomolecular Magnetic Resonance, Goethe University Frankfurt am Main, Frankfurt am Main, Germany

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