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Citations per year

Number of citations per year for the bioinformatics software tool FlyAtlas
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Protocols

FlyAtlas specifications

Information


Unique identifier OMICS_03126
Name FlyAtlas
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster

Maintainers


  • person_outline Julian Dow
  • person_outline David Leader

Additional information


http://flyatlas.org/atlas.cgi

Publications for FlyAtlas

FlyAtlas citations

 (31)
library_books

Loss of the Drosophilam AAA mitochondrial protease paraplegin results in mitochondrial dysfunction, shortened lifespan, and neuronal and muscular degeneration

2018
PMCID: 5833341
PMID: 29467464
DOI: 10.1038/s41419-018-0365-8

[…] ene, CG2658, encodes a previously uncharacterized homolog of human paraplegin with 58% identity and 75% similarity at the protein level (Supplementary FigureĀ ). Data from the Drosophila modENCODE and FlyAtlas data repositories indicate that the CG2658 gene is ubiquitously expressed in all tissues throughout development. The Pfam motif prediction algorithm predicts that the polypeptide encoded by C […]

call_split

Position Matters: Network Centrality Considerably Impacts Rates of Protein Evolution in the Human Proteinā€“Protein Interaction Network

2017
Genome Biol Evol
PMCID: 5570066
PMID: 28854629
DOI: 10.1093/gbe/evx117
call_split See protocol

[…] HumanAtlas database (). For each human gene, mRNA abundance was estimated as the average across the 32 tissues. Messenger RNA abundance data for D. melanogaster and C. elegans were obtained from the FlyAtlas database (whole adult fly; ) and the EBI Expression Atlas (accession number E-MTAB-2812; ), respectively. S. cerevisiae gene expression data was obtained from .Messenger RNA expression breadt […]

library_books

Drosophila melanogaster positive transcriptional elongation factors regulate metabolic and sex biased expression in adults

2017
BMC Genomics
PMCID: 5436443
PMID: 28521739
DOI: 10.1186/s12864-017-3755-x

[…] . We used visual examination to remove clusters driven by differences between the two sham genotypes and clusters that showed weak differential expression, or responded even without induction.We used FlyAtlas [] microarray expression data to infer where differentially expressed genes were expressed in our experiments. We converted microarray Oligo IDs to FlyBase [] gene IDs using DAVID (v6.7) []. […]

library_books

Intrinsic protein disorder reduces small scale gene duplicability

2017
PMCID: 5737077
PMID: 28430886
DOI: 10.1093/dnares/dsx015

[…] d the expression level values across all 32 tissues and used the mean values in further analyses. For D. melanogaster and C. elegans, we obtained the mRNA abundance data for the whole adult body from FlyAtlas and modENCODE (data from the EBI Expression Atlas, accession number E-MTAB-2812), respectively. S. cerevisiae gene expression data were obtained from Nagalakshmi et al. In the case of A. thal […]

library_books

A fat derived metabolite regulates a peptidergic feeding circuit in Drosophila

2017
PLoS Biol
PMCID: 5369665
PMID: 28350856
DOI: 10.1371/journal.pbio.2000532

[…] the miRNAs themselves but to direct a follow-up screen using gene-specific RNAi. We thus compiled a list of potential miR-iab-4 targets using the online prediction algorithm TargetScan []. Using the FlyAtlas tissue-specific expression data [] available on FlyBase, we limited this list of potential miR-iab-4 targets to those expressed in the adult fat body. In a small secondary screen using gene-s […]

library_books

Decay of Sexual Trait Genes in an Asexual Parasitoid Wasp

2016
Genome Biol Evol
PMCID: 5381511
PMID: 28172869
DOI: 10.1093/gbe/evw273

[…] d in one of the tissues related to sexual functions. This expression enrichment was determined by identifying the top blastp hit among N. vitripennis and D. melanogaster genes in the Waspatlas () and Flyatlas () databases, respectively. Expression data was available for testes in N. vitripennis and testes, accessory glands and spermathecae in D. melanogaster. We attempted to predict whether the va […]


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FlyAtlas institution(s)
Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK
FlyAtlas funding source(s)
Supported by the Biotechnology and Biological Sciences Research Council [BB/K019953/1].

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