FMAP specifications

Information


Unique identifier OMICS_13223
Name FMAP
Alternative name Functional Mapping and Analysis Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data FMAP takes raw sequence data.
Output data FMAP generates the following outputs: (i) an alignment of reads to a reference database, (ii) the abundances of gene families, and (iii) enriched operons and pathways from the differentially abundant (DA) gene analysis.
Operating system Unix/Linux
Programming languages Perl, R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Source code URL http://www.cpan.org/authors/id/F/FA/FANGLY/Statistics-R-0.33.tar.gz
Maintained Yes

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Maintainer


  • person_outline Yang Xie <>

Publication for Functional Mapping and Analysis Pipeline

FMAP institution(s)
Department of Clinical Sciences, Quantitative Biomedical Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, TX, USA; Center for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA
FMAP funding source(s)
Funding was provided by the National Institutes of Health/National Cancer Institute (5R01CA152301 and 1R01CA172211) and by the Cancer Prevention and Research Institute of Texas (RP150596).

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