FMM specifications

Information


Unique identifier OMICS_02693
Name FMM
Alternative name From Metabolite to Metabolite
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for From Metabolite to Metabolite

FMM in publications

 (7)
PMCID: 5602787
PMID: 29086092
DOI: 10.1186/s13321-017-0239-6

[…] re is the average of the reaction scores of all its reactions. in faust et al. [], rpair mappings are used without atom tracking to show the connectivity of compounds without annotations of atoms. in fmm [], reactions are represented as a \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} […]

PMCID: 5320022
PMID: 28210797
DOI: 10.1007/s00253-017-8137-4

[…] a unidirectional molecular flow. its vertices (or nodes) represent signals, e.g. metabolite concentrations, and the edges (branches, arrows) represent functional dependencies, e.g. carbon flow from metabolite to metabolite (mason ). a vertex receives signals via incoming edges and transmits information along outgoing edges, information being, for instance, increases or decreases […]

PMCID: 4993939
PMID: 27595107
DOI: 10.1155/2016/7863706

[…] for example, metabolic pathways of corynebacterium glutamicum are rationally engineered to produce l-amino acids on an industrial scale []. to accomplish this task, specific tools are used such as fmm (from metabolite to metabolite) [] cytoscape [], celldesigner [], sbw (systems biology workbench) [], copasi (complex pathway simulator) [], and cobra (constraints based reconstruction […]

PMCID: 4300991
PMID: 25480015
DOI: 10.1186/1471-2164-15-1070

[…] to a particular end product. a route was accepted as intact if at least one match was found for each enzyme-catalyzed reaction. metabolic routes between two given compounds were retrieved from the fmm server [] which connects different kegg reference reaction maps [] and reconstructs metabolic pathways between metabolites. for the analysis, the amino acids were paired with amino acid synthesis […]

PMCID: 4012781
PMID: 24808763
DOI: 10.1186/1480-9222-16-8

[…] (iv) to analyze metabolic pathways; (v) for mining of omics data; (vi) to select targets for enzyme engineering; and for (viii) analysis of degradation pathways of xenobiotic compounds []., from metabolite to metabolite (fmm) is a web server freely available at http://fmm.mbc.nctu.edu.tw/ that is able to search all possible pathways between known input and output compounds among various […]


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FMM institution(s)
Institute of Molecular Medicine and Bioengineering, National Chiao Tung University, Hsin-Chu, Taiwan, China

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