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FNTM specifications


Unique identifier OMICS_06182
Alternative names Functional Networks of Tissues in Mouse, MouseMAP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • Rodents
    • Mus musculus


  • person_outline Olga G. Troyanskaya

Publications for Functional Networks of Tissues in Mouse

FNTM citations


Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene

Mamm Genome
PMCID: 4032469
PMID: 24700285
DOI: 10.1007/s00335-014-9508-0

[…] lysis (IPA, http://www.ingenuity.com/), a bioinformatics system based on a manually curated knowledgebase, was used to map the known IPA functional interactions between candidate and known pain genes.MouseMap (http://sonorus.princeton.edu/mousemap/applet.shtml) is a web-based tool that provides access to tissue-specific predicted functional relationships between mouse genes (Guan et al. ). A list […]


Tissue Specific Functional Networks for Prioritizing Phenotype and Disease Genes

PLoS Comput Biol
PMCID: 3459891
PMID: 23028291
DOI: 10.1371/journal.pcbi.1002694
call_split See protocol

[…] To allow dynamic visualization and cross-network comparison of our integration results, we developed the mouseMAP software (http://mouseMAP.princeton.edu), based on the open-source viewing framework Graphle that we developed in . MouseMAP is based on the Prefuse Java visualization library, the Args4j com […]


Combining QTL Data for HDL Cholesterol Levels from Two Different Species Leads to Smaller Confidence Intervals

PMCID: 2958246
PMID: 20551980
DOI: 10.1038/hdy.2010.75
call_split See protocol

[…] interval was counted. To convert from cM to Build 37 base pair positions, we used the Mouse Map Converter available on The Jackson Laboratory’s Center for Genome Dynamics Website (http://cgd.jax.org/mousemap converter). We chose the sex-averaged cM position as input. In comparing the gene lists within the QTL confidence intervals prior to and after species combination, the confidence interval res […]

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FNTM institution(s)
Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA; Simons Center for Data Analysis, Simons Foundation, NY, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA
FNTM funding source(s)
National Science Foundation (NSF) CAREER [DBI-0546275]; National Institutes of Health [R01 GM071966, R01 HG005998 and T32 HG003284]; National Institute of General Medical Sciences (NIGMS) Center of Excellence [P50 GM071508]

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