FNTM statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool FNTM
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Gene co-expression prediction chevron_right
Want to access the full stats & trends on this tool?

Protocols

FNTM specifications

Information


Unique identifier OMICS_06182
Name FNTM
Alternative names Functional Networks of Tissues in Mouse, MouseMAP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Rodents
    • Mus musculus

Maintainer


  • person_outline Olga G. Troyanskaya

Publications for Functional Networks of Tissues in Mouse

FNTM citations

 (3)
library_books

Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene

2014
Mamm Genome
PMCID: 4032469
PMID: 24700285
DOI: 10.1007/s00335-014-9508-0

[…] lysis (IPA, http://www.ingenuity.com/), a bioinformatics system based on a manually curated knowledgebase, was used to map the known IPA functional interactions between candidate and known pain genes.MouseMap (http://sonorus.princeton.edu/mousemap/applet.shtml) is a web-based tool that provides access to tissue-specific predicted functional relationships between mouse genes (Guan et al. ). A list […]

call_split

Tissue Specific Functional Networks for Prioritizing Phenotype and Disease Genes

2012
PLoS Comput Biol
PMCID: 3459891
PMID: 23028291
DOI: 10.1371/journal.pcbi.1002694
call_split See protocol

[…] To allow dynamic visualization and cross-network comparison of our integration results, we developed the mouseMAP software (http://mouseMAP.princeton.edu), based on the open-source viewing framework Graphle that we developed in . MouseMAP is based on the Prefuse Java visualization library, the Args4j com […]

call_split

Combining QTL Data for HDL Cholesterol Levels from Two Different Species Leads to Smaller Confidence Intervals

2010
Heredity
PMCID: 2958246
PMID: 20551980
DOI: 10.1038/hdy.2010.75
call_split See protocol

[…] interval was counted. To convert from cM to Build 37 base pair positions, we used the Mouse Map Converter available on The Jackson Laboratory’s Center for Genome Dynamics Website (http://cgd.jax.org/mousemap converter). We chose the sex-averaged cM position as input. In comparing the gene lists within the QTL confidence intervals prior to and after species combination, the confidence interval res […]


Want to access the full list of citations?
FNTM institution(s)
Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA; Simons Center for Data Analysis, Simons Foundation, NY, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA
FNTM funding source(s)
National Science Foundation (NSF) CAREER [DBI-0546275]; National Institutes of Health [R01 GM071966, R01 HG005998 and T32 HG003284]; National Institute of General Medical Sciences (NIGMS) Center of Excellence [P50 GM071508]

FNTM reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review FNTM