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FNTM specifications

Information


Unique identifier OMICS_06182
Name FNTM
Alternative names Functional Networks of Tissues in Mouse, MouseMAP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Rodents
    • Mus musculus

Maintainer


  • person_outline Olga G. Troyanskaya <>

Publications for Functional Networks of Tissues in Mouse

FNTM in publications

 (5)
PMCID: 5899322
PMID: 29653584
DOI: 10.1186/s13073-018-0534-5

[…] visualization plot was constructed using the r package circlize []., to screen for functional networks among the differentially methylated and expressed genes (conv-r versus gf) we employed the functional networks of tissues in mouse [] prediction tool for mouse tissue-specific protein interactions, which integrates genomic data and prior knowledge of gene function. we used the small […]

PMCID: 4905434
PMID: 26918602
DOI: 10.18632/oncotarget.7561

[…] zd6t, and zd12t esophagus (figure ). thus, upregulation of oncogenic mir-223, -31, and -21 is accompanied by down-regulation of their respective tumor suppressor target fbxw7, stk40 and pdcd4., functional networks of tissues in mouse (fmtn) [, ] is a prediction tool for tissue-specific protein interactions for the mouse that is based on the integration of a variety of genomic data and prior […]

PMCID: 4032469
PMID: 24700285
DOI: 10.1007/s00335-014-9508-0

[…] genome database, aresource abbreviations: mgd mouse genome database, omim online mendelian inheritance in man, snps3d single nucleotide polymorphisms—3 databases (modules), rgd rat genome database, mousemap (http://sonorus.princeton.edu/mousemap/applet.shtml) is a web-based tool that provides access to tissue-specific predicted functional relationships between mouse genes (guan et al. ). a list […]

PMCID: 3459891
PMID: 23028291
DOI: 10.1371/journal.pcbi.1002694

[…] genes specifically predicted by the cerebellum network to be related to ataxia, which are supported by both literature and experimental evidence. our networks are publicly available at http://mousemap.princeton.edu, which features the ability to compare networks across tissues for analyzing the dynamics of functional relationships. our current framework covers 107 major tissues […]

PMCID: 2958246
PMID: 20551980
DOI: 10.1038/hdy.2010.75

[…] interval was counted. to convert from cm to build 37 base pair positions, we used the mouse map converter available on the jackson laboratory’s center for genome dynamics website (http://cgd.jax.org/mousemap converter). we chose the sex-averaged cm position as input. in comparing the gene lists within the qtl confidence intervals prior to and after species combination, the confidence interval […]


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FNTM institution(s)
Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA; Simons Center for Data Analysis, Simons Foundation, NY, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA
FNTM funding source(s)
National Science Foundation (NSF) CAREER [DBI-0546275]; National Institutes of Health [R01 GM071966, R01 HG005998 and T32 HG003284]; National Institute of General Medical Sciences (NIGMS) Center of Excellence [P50 GM071508]

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