FoldAmyloid statistics

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Associated diseases

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FoldAmyloid specifications

Information


Unique identifier OMICS_04132
Name FoldAmyloid
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for FoldAmyloid

FoldAmyloid in publications

 (20)
PMCID: 5522423
PMID: 28733641
DOI: 10.1038/s41598-017-06419-1

[…] of saa and its contribution to the pathogenesis of aa amyloidosis further experiments need to be carried out., amyloid-prone regions of murine saa1.1 were predicted using the programs waltz, foldamyloid, tango, amylpred and aggrescan., the protein structure homology model was generated using the swiss-model protein structure homology-modelling server (www.swissmodel.expasy.org). […]

PMCID: 5489805
PMID: 28536362
DOI: 10.3390/biomedicines5020019

[…] elmer, ls 55 spectrofluorometer with excitation at 380 nm and emission scan from 390–600 nm. slit widths were set at 5 nm for both excitation and emission and the scan rate set at 1200 nm/min., foldamyloid (an online web server) was used to predict the amyloidogenic regions of hewl. it does the prediction by analyzing the amino acid sequence of the polypeptide chain by considering […]

PMCID: 5390671
PMID: 28410533
DOI: 10.1016/j.redox.2017.03.027

[…] the aggregation propensity of the generated variants was analysed using three different algorithms: (i) aggrescan (http://bioinf.uab.es/aggrescan/) , (ii) tango (http://tango.crg.es/) and (iii) foldamyloid (http://bioinfo.protres.ru/fold-amyloid/) . aggregation propensities were calculated using the default settings., cells expressing selected aβ42-gfp variants for 8 h, 16 h and 48 h […]

PMCID: 5341037
PMID: 28272432
DOI: 10.1038/srep44064

[…] six algorithms were used to identify aggregation-prone or amyloidogenic segments within the human caf or the corresponding sequence from various other species: tango, waltz, metamyl, aggrescan, foldamyloid, and zipperdb. for each algorithm a consensus sequence was generated (). based on these consensus sequences, a super-consensus was built and mapped onto the human caf (, yellow). […]

PMCID: 5314377
PMID: 28211492
DOI: 10.1038/srep42867

[…] rdlb. tango calculation suggests that the regions between residues 51 and 57 in both rdla (vavinlv) and rdlb (vsviglv) have a high propensity for β-sheet aggregation. the algorithms aggrescan and foldamyloid which predict aggregation-prone regions showed agreement with the results obtained using tango., when rodlins are purified from the cell walls of streptomyces, the trifluoroacetic acid […]


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FoldAmyloid institution(s)
Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region, Russia

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