Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

footprintDB

Online

Integrates several open access repositories of curated cis-elements, DNA motifs, and TFs into a unique repository. footprintDB systematically annotates the binding interfaces of the TFs by exploiting protein–DNA complexes deposited in the Protein Data Bank. Each entry in footprintDB is thus a DNA motif linked to the protein sequence of the TF(s) known to recognize it, and in most cases, the set of predicted interface residues involved in specific recognition.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

3 user reviews

3 user reviews

Thomas's avatar image

Thomas

Very useful database, great free alternative to TRANSFAC

Carlos's avatar image

Carlos

nice database, basic for work with transcription factors

Irma's avatar image

Irma

It´s a very useful database and easy to use

footprintDB forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

footprintDB classification

  • Animals
  • Fungi
  • Plants
  • Protists

footprintDB specifications

Restrictions to use:
None
Data access:
Browse
Maintained:
Yes
Community driven:
No
User data submission:
Not allowed

footprintDB support

Documentation

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Laboratory of Computational Biology, Department of Genetics and Plant Production, Estación Experimental de Aula Dei/CSIC, Zaragoza, Spain; Fundación ARAID, Zaragoza, Spain

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.