ForestTreeDB specifications


Unique identifier OMICS_21044
Name ForestTreeDB
Restrictions to use None
Database management system Oracle
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No


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Publication for ForestTreeDB

ForestTreeDB citations


ForestTreeDB: a database dedicated to the mining of tree transcriptomes

Nucleic Acids Res
PMCID: 1716727
PMID: 17130142
DOI: 10.1093/nar/gkl882

[…] e annotation procedures combined with the queries available through the interface is well suited to search for candidate genes, a preliminary step which is crucial before performing genetic analyses. ForestTreeDB's strength is to facilitate this procedure in a user-friendly manner. Also, as the user simultaneously combines several queries, the database interface enables flexibility for the mining […]


Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

BMC Genomics
PMCID: 1557672
PMID: 16824208
DOI: 10.1186/1471-2164-7-174

[…] regions and distinguish synonymous from nonsynonymous SNPs. To facilitate the choice of candidate genes to be mapped, this white spruce SNP resource was integrated into a publicly available database ForestTreeDB, which also includes functional annotations of the gene index. […]

ForestTreeDB institution(s)
Laval University, Centre de Recherche en Biologie Forestiere, Quebec, Canada; University of Minnesota, CCGB, Minneapolis, MN, USA; University MN, AHC-Research Computing, Minneapolis, MN, USA
ForestTreeDB funding source(s)
Supported by Genome Québec, Genome Canada for the Arborea project, the National Science Foundation Plant Genome Research Program; and the USDA Cooperative State Research, Education and Extension Service Plant Genome Program

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