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forqs specifications
Information
| Unique identifier | OMICS_02196 |
|---|---|
| Name | forqs |
| Alternative name | Forward-in-time simulation of Recombination, Quantitative traits, and Selection |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | C++ |
| License | BSD 2-clause “Simplified” License |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Publication for Forward-in-time simulation of Recombination, Quantitative traits, and Selection
Forqs: forward-in-time simulation of recombination, quantitative traits and selection.
forqs in publications
(3)Nucleotide diversity inflation as a genome wide response to experimental lifespan extension in Drosophila melanogaster
[…] were “-n 100 -c 5 -c 400 -q 20 -e sanger -p -k 0.0000000001”, while “--theta” was set to be the θ estimated for each sample., genome simulations under a neutrality model were conducted using forqs []. the haplotype data for the simulation were obtained from the drosophila genetic reference panel 2 (dgrp2, http://dgrp2.gnets.ncsu.edu/) of 205 inbreed lines. the mass-breeding phase […]
Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system
[…] pool-hmm were set to be “-n 100 -c 5 -c 400 -q 20 -e sanger -p -k 0.0000000001”, and “--theta” was set to be the θ estimated for each sample., genome-wide neutrality simulations were performed using forqs [] to test whether observed patterns of genomic differentiation could result from drift alone. the haplotype data for the simulation under a neutrality model were derived from the drosophila […]
Power Analysis of Artificial Selection Experiments Using Efficient Whole Genome Simulation of Quantitative Traits
[…] estimates, when compared to estimates calculated directly from read counts, can lead to an increase in power, although the magnitude of improvement is condition dependent., we used the program forqs () for all forward simulations. forqs simulates whole genomes of individuals efficiently by tracking the haplotype chunks that are inherited from the founder individuals in the initial […]
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