FORTE protocols

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FORTE specifications

Information


Unique identifier OMICS_21222
Name FORTE
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA
Output data Some pairwise alignments.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Kentaro Tomii <>
  • person_outline FORTE Team <>

Publication for FORTE

FORTE in pipeline

2017
PMCID: 5455965
PMID: 28369657
DOI: 10.1093/molbev/msx096

[…] protein, 100 structural models were built using the homology model application of the molecular operating environment software package (moe 2014.0901) (), based on the alignments calculated using forte () and hhpred (; ), which are profile–profile comparison methods for protein structure prediction. then we chose the best models based on gb/vi scores (). calculation of hydrophobic, positive […]


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FORTE in publications

 (8)
PMCID: 5884625
PMID: 29554130
DOI: 10.1371/journal.ppat.1006882

[…] mafft (v7.351b) [], and visualized using msaviewer [] or ncbi multiple sequence alignment viewer 1.6.0., 3d-models of aig1 domains in ehi_176590, ehi_129470, and ehi_022500 were constructed using forte [], with modeller (9v8) based on alignments between the query and gimaps, aig1 domain containing protein from mammals (pdb id codes 2xtp (gimap2), and 3zjc (gimap7)., to express ehi_176590 […]

PMCID: 5455965
PMID: 28369657
DOI: 10.1093/molbev/msx096

[…] protein, 100 structural models were built using the homology model application of the molecular operating environment software package (moe 2014.0901) (), based on the alignments calculated using forte () and hhpred (; ), which are profile–profile comparison methods for protein structure prediction. then we chose the best models based on gb/vi scores (). calculation of hydrophobic, positive […]

PMCID: 4757695
PMID: 26925040
DOI: 10.3389/fmicb.2016.00165

[…] consensus result was retrieved as a most probable solution. the fr analysis (attempt to match the query sequence to known protein structures) was carried out using pdbblast, hhsearch (), ffas03 (), forte (), sam-t02 (), 3dpssm (), inbgu (), fugue (), mgenthreader (), and sparks (). target-template alignments reported by these methods were compared, evaluated, and ranked by the pcons server () […]

PMCID: 3460876
PMID: 23029559
DOI: 10.1371/journal.pone.0046633

[…] the statistical significance of the corresponding alignment scores. some web servers implementing the profile-profile alignment algorithms are available, including coma, phyre, genthreader, forte and webprc ., a key step to improve the performance of the svm-based methods is to find a fast and accurate representation of protein sequence. although the profile-based features improve […]

PMCID: 3398312
PMID: 22244085
DOI: 10.1186/1471-2105-13-11

[…] the existence of ancient short peptide ancestors. we discuss the possibility of the convergent evolution of the protein short segments with patterns detected using our cross profile analysis., using forte, we compared the profiles of two different profile types: (i) a sequence-based profile stored in the forte library and produced by psi-blast containing evolutionary information, and (ii) […]


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FORTE institution(s)
Computational Biology Research Center, The National Institute of Advanced Industrial Science and Technology, Tokyo, Japan

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