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FoxPrimer specifications

Information


Unique identifier OMICS_33802
Name FoxPrimer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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FoxPrimer citations

 (3)
library_books

Genome wide DNase hypersensitivity, and occupancy of RUNX2 and CTCF reveal a highly dynamic gene regulome during MC3T3 pre osteoblast differentiation

2017
PLoS One
PMCID: 5703546
PMID: 29176792
DOI: 10.1371/journal.pone.0188056

[…] n (bglap2), integrin-binding sialoprotein (ibsp), and glyceraldehyde 3-phosphate dehydrogenase (gapdh) are described elsewhere []. Additional primer sequences are provided in and were designed using FoxPrimer (www.foxprimer.org; Dobson et al.). […]

library_books

The bone specific Runx2 P1 promoter displays conserved three dimensional chromatin structure with the syntenic Supt3h promoter

2014
Nucleic Acids Res
PMCID: 4176362
PMID: 25120271
DOI: 10.1093/nar/gku712

[…] method and normalized to gapdh. Primer sequences for runx2P1, runx2P2, osteocalcin, bone sialoprotein and gapdh are described elsewhere (). Primers for detection of supt3h message were designed using FoxPrimer (www.foxprimer.org; Dobson et al., manuscript in preparation) and are: forward, 5′-AAGGCATTGACGAGGATGAC-3′ and reverse, 5′-TCTTCAAACATTGCCAGCAG-3′. Student's t-test was used to assess the P […]

library_books

Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to control of osteoblastogenesis

2014
Genome Biol
PMCID: 4056528
PMID: 24655370
DOI: 10.1186/gb-2014-15-3-r52

[…] ression level was normalized to that of Hprt1 using 2-ΔΔCT method. Experiments were performed in triplicate and results are presented as mean values ± SEM. Primers for qPCR reactions were designed by FoxPrimer [,], and are available in Additional file . […]

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