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chevron_left Data analysis Protein-protein docking chevron_right
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FoXSDock specifications

Information


Unique identifier OMICS_10451
Name FoXSDock
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The input is two proteins and a SAXS profile of their complex.
Output data The output is a list of potential complexes sorted by a score that combines interface energy and the fit to SAXS profile.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Dina Schneidman-Duhovny <>

Information


Unique identifier OMICS_10451
Name FoXSDock
Interface Web user interface
Restrictions to use None
Input data The input is two proteins and a SAXS profile of their complex.
Output data The output is a list of potential complexes sorted by a score that combines interface energy and the fit to SAXS profile.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Dina Schneidman-Duhovny <>

Publication for FoXSDock

FoXSDock in publications

 (3)
PMCID: 5758563
PMID: 29311576
DOI: 10.1038/s41467-017-02570-5

[…] and may be important for other roles of suv3.fig. 3, we next used the saxs data for the fl-cg-dss-suv3183–699 complex to independently verify the arrangement of the complex subunits. we applied foxsdock to dock cg-suv3183–699 to fl-cg-dss1 and obtained multiple models with various placements of cg-dss1 and cg-suv3. the model that corresponded to the orientation of both components […]

PMCID: 5553349
PMID: 28501583
DOI: 10.1016/j.abb.2017.05.005

[…] with a closed gα conformation induced by gtp ., the combination of saxs and nmr has also been successfully applied in the field of molecular docking. the programs haddock , , pydocksaxs , , and foxsdock have been developed for robust screening of ligand binding and complex formation and include scoring functions for saxs data. it has been shown that the incorporation of saxs data yields […]

PMCID: 3427135
PMID: 22800408
DOI: 10.1186/1472-6807-12-17

[…] a relatively accurate initial configuration []; in the absence of the initial configuration, the method starts from 1000 random orientations. two recently developed methods, pydocksaxs [] and foxsdock [], integrate global search docking programs, energy based scoring functions, and a saxs fit score. pydocksaxs uses ftdock [] for sampling complex orientations, pydock [] for energy-based […]


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FoXSDock institution(s)
Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, and California Institute for Quantitative Biosciences (QB3), University of California at San Francisco, CA, USA

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