FP filter specifications

Information


Unique identifier OMICS_29630
Name FP filter
Alternative name False Positives filter
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Pawel P. Wozniak
  • person_outline Malgorzata Kotulska

Publication for False Positives filter

FP filter citation

library_books

CNNdel: Calling Structural Variations on Low Coverage Data Based on Convolutional Neural Networks

2017
Biomed Res Int
PMCID: 5467383
PMID: 28630866
DOI: 10.1155/2017/6375059

[…] to more accurate split-reads methods than discordant paired reads methods.In this paper, we introduce a SV caller named CNNdel. CNNdel utilizes a convolutional neural network model to accomplish the false positives filter procedure. Compared with other integrated methods, CNNdel is capable of automatically assigning the weights of SV features by neuron networks and the detection accuracy on low c […]

FP filter institution(s)
Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wroclaw University of Science and Technology, Wroclaw, Poland; Centre for Molecular and Biomolecular Informatics, Radboud University Medical Centre, GA, Nijmegen, The Netherlands
FP filter funding source(s)
Supported by Statuary Funds, the Polish National Science Centre (Etiuda 4, DEC2016/20/T/NZ1/00514), the Erasmus+ programme and the EU project NewProt (289350).

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