FR-HIT pipeline

FR-HIT specifications


Unique identifier OMICS_01850
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some reference sequences and queries.
Input format FASTA,FASTQ
Output data Some recruitment results.
Operating system Unix/Linux
Programming languages C++
License MIT License
Computer skills Advanced
Version 0.7.1
Stability Stable
Maintained Yes



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  • person_outline Weizhong Li <>

Publication for FR-HIT

FR-HIT IN pipeline

PMCID: 4982221
PMID: 27525040
DOI: 10.1186/s13068-016-0581-3

[…] genomes as described recently [52]. therefore, the combined metagenome sequencing dataset (see above) was used, representing the thermophilic biogas-producing microbial community. afterwards, the fr-hit software tool [53] was used to perform a global alignment against the completely sequenced genomes of the strains described above. an identity cutoff of 75 % was used to align the sequencing […]

FR-HIT institution(s)
Center for Research in Biological Systems, University of California San Diego, La Jolla, CA, USA
FR-HIT funding source(s)
Supported by Awards (R01RR025030 and R01HG005978) from National Center for Research Resources and National Human Genome Research Institute.

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