SynMap specifications

Unique identifier:
OMICS_13395
Restrictions to use:
None
Output data:
Log file, homolog search, diagonals and results.
License:
MIT License
Stability:
Stable
Interface:
Web user interface
Input data:
Putative genes or regions of homology between two genomes
Programming languages:
Python
Computer skills:
Basic
Maintained:
Yes

Subtools

  • FractBias

SynMap specifications

Unique identifier:
OMICS_13395
Interface:
Command line interface
Input data:
Putative genes or regions of homology between two genomes
Operating system:
Unix/Linux
License:
MIT License
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Output data:
The graphical output of FractBias is composed of subplots for each target genome chromosome.
Programming languages:
Python
Computer skills:
Advanced
Maintained:
Yes

Subtools

  • FractBias

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SynMap distribution

download

SynMap support

Documentation

Maintainer

  • Eric Lyons <>
  • Eric Lyons <>

Additional information

https://genomevolution.org/wiki/index.php/FractBias

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Publications

Institution(s)

BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, AZ, USA; Genetis GIDP, University of Arizona, Tucson, AZ, USA; Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA

Funding source(s)

This work has been supported by the U.S. National Science Foundation (IOS – 1339156 and IOS – 1444490).

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