FACETS specifications

Unique identifier:
OMICS_12119
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
BAM
Programming languages:
R
Stability:
Stable
Name:
Fraction and Allele-Specific Copy Number Estimates from Tumor Sequencing
Interface:
Command line interface
Input data:
The input data for FACETS analysis pipeline are aligned sequence bam file with standard base and mapping quality filter.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes

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FACETS support

Maintainer

  • Ronglai Shen <>

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Publications

Institution(s)

Department of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center, New York, NY, USA

Funding source(s)

Supported in part by National Cancer Institute grants CA124514, CA163251, CA195365, P01-CA129243, Susan G. Komen for the Cure foundation grant IIR12221291, and NCI [(Cancer Center Support) P30-CA008748 to Memorial Sloan Kettering Cancer Center, in part].

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