FACETS specifications


Unique identifier OMICS_12119
Alternative name Fraction and Allele-Specific Copy Number Estimates from Tumor Sequencing
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data The input data for FACETS analysis pipeline are aligned sequence bam file with standard base and mapping quality filter.
Input format BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.5.0
Stability Stable
Maintained Yes


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  • person_outline Ronglai Shen <>

FACETS article

FACETS institution(s)
Department of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center, New York, NY, USA
FACETS funding source(s)
Supported in part by National Cancer Institute grants CA124514, CA163251, CA195365, P01-CA129243, Susan G. Komen for the Cure foundation grant IIR12221291, and NCI [(Cancer Center Support) P30-CA008748 to Memorial Sloan Kettering Cancer Center, in part].

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