FragAnchor statistics

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FragAnchor specifications

Information


Unique identifier OMICS_07286
Name FragAnchor
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for FragAnchor

FragAnchor in publications

 (19)
PMCID: 5379732
PMID: 28372538
DOI: 10.1186/s12864-017-3619-4

[…] were further investigated. in the next steps, proteins containing a transmembrane domain, a gpi anchor or an endoplasmic reticulum (er) retention signal were excluded (using phobius/tmhmm/das, fraganchor, scanprosite). in total, 470 predicted proteins fulfilled all criteria and therefore represent effector protein candidates within the c. purpurea genome (additional file ). as shown […]

PMCID: 5097913
PMID: 27872839
DOI: 10.3389/fchem.2016.00042

[…] and secretomep v.2.0 (http://www.cbs.dtu.dk/services/secretomep/) softwares were used to predict proteins secreted by classical and non-classical pathways, respectively, and fraganchor (poisson et al., ) to assign predicted glycosylphosphatidylinositol (gpi)-anchored proteins. transmembrane helices based on a hidden markov model (tmhmm) algorithm […]

PMCID: 5042520
PMID: 27685262
DOI: 10.1371/journal.pone.0163302

[…] and b consecutive and most intense ions., subcellular localization, gpi and glycosylation were annotated using either literature references or prediction tools. gpi-modification was predicted using fraganchor (http://navet.ics.hawaii.edu/~fraganchor/nnhmm/nnhmm.html), glycosylation using netnglyc (http://www.cbs.dtu.dk/services/netnglyc/) and subcellular localization prediction using psort ii […]

PMCID: 5014161
PMID: 27471282
DOI: 10.1093/jxb/erw279

[…] using the following online tools: big-pi plant predictor (http://mendel.imp.ac.at/gpi/plant_server.html), gpi-som (http://gpi.unibe.ch/), predgpi (http://gpcr.biocomp.unibo.it/predgpi/pred.htm), fraganchor (http://webcache.googleusercontent.com/search?q=cache:oddbi8i8nzsj:navet.ics.hawaii.edu/~fraganchor/nnhmm/nnhmm.html+&cd=1&hl=ja&ct=clnk&gl=de), and the potential gpi-ap […]

PMCID: 4855366
PMID: 27141812
DOI: 10.1186/s13071-016-1518-1

[…] to the genbank with the accession numbers kr134351 and kr134352, respectively. the amino acid sequences of bcmsa1 and bcsa1 were analyzed by a glycosylphosphatidylinositol (gpi) anchor predictor (fraganchor, http://navet.ics.hawaii.edu/∼fraganchor/nnhmm/nnhmm.html). the secondary structure of bcmsa1 amino acid sequence was predicted by the sosui system […]


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