Fragger specifications

Information


Unique identifier OMICS_32362
Name Fragger
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format PDB
Operating system Unix/Linux
Programming languages Other
License GNU Lesser General Public License version 2.1
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Kam Zhang

Fragger citation

library_books

Fragger: a protein fragment picker for structural queries

2017
F1000Res
PMCID: 5773926
PMID: 29399321
DOI: 10.5256/f1000research.13520.r26264

[…] ) ∈ [ d inf, d sup]}      { distance ( f i, r j) comes from the database index}    end for    {exact query: refine the result of pruning}    mf  ← {∀ f i ∈ mf  | distance( f i, q) ≤ d q}    return mf Fragger exploits the triangular inequality of RMSD to prune the fragment space ( and ). RMSDs are computed efficiently via the QCP method . Fragger is written in OCaml , except backbone RMSD computa […]

Fragger reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Fragger