Fragment Merger Tool specifications

Information


Unique identifier OMICS_24233
Name Fragment Merger Tool
Interface Web user interface
Restrictions to use None
Input data Two to twelve chromatograms and/or files.
Input format ABL,FASTA
Output data Some details for each fragment submitted; (optional) the final merged (assembled) sequence, detailed output of each of the successive merges, the merged sequence aligned against the reference sequence/s; and a download hyperlink to archive file containing all input and output files (excluding chromatograms).
Output format HTML+FASTA+ZIP
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Viruses
    • Hepatitis B virus

Maintainers


  • person_outline Trevor Bell <>
  • person_outline Anna Kramvis <>

Publication for Fragment Merger Tool

library_books

Fragment merger: an online tool to merge overlapping long sequence fragments.

2013 Viruses
PMID: 23482300
DOI: 10.3390/v5030824
Fragment Merger Tool institution(s)
Hepatitis Virus Diversity Research Programme (HVDRP), Department of Internal Medicine, School of Clinical Medicine, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
Fragment Merger Tool funding source(s)
Supported by the National Bioinformatics Network (NBN), the National Research Foundation (NRF), the Poliomyelitis Research Foundation, the Medical Research Council (MRC) and the University of the Witwatersrand.

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