fragScaff specifications

Unique identifier:
OMICS_12163
Interface:
Command line interface
Input data:
The input to fragScaff consists of an initial genome assembly (e.g., based on shotgun and mate-pair sequencing data) and data produced by CPT-seq.
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Biological technology:
Illumina
Computer skills:
Advanced
Maintained:
Yes

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fragScaff support

Maintainer

  • Jay Shendure <>

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Publications

Institution(s)

Department of Genome Sciences, University of Washington, Seattle, WA, USA; Illumina, Inc, Advanced Research Group, San Diego, CA, USA

Funding source(s)

Grants HG006283 and T32HG000035 from the National Human Genome Research Institute (NHGRI); graduate research fellowship DGE-0718124 from the National Science Foundation

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