fragScaff specifications


Unique identifier OMICS_12163
Name fragScaff
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The input to fragScaff consists of an initial genome assembly (e.g., based on shotgun and mate-pair sequencing data) and data produced by CPT-seq.
Biological technology Illumina
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Jay Shendure <>

Publication for fragScaff

fragScaff institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA; Illumina, Inc, Advanced Research Group, San Diego, CA, USA
fragScaff funding source(s)
Grants HG006283 and T32HG000035 from the National Human Genome Research Institute (NHGRI); graduate research fellowship DGE-0718124 from the National Science Foundation

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