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Frameshift detection software tools | Genome annotation

Frameshift (FS) prediction is important for analysis and biological interpretation of metagenomic sequences. Since a genomic context of a short metagenomic sequence is rarely known, there is not enough data available to estimate parameters of…
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FragGeneScan
Desktop

FragGeneScan

A gene prediction method which combines sequencing error models and codon…

A gene prediction method which combines sequencing error models and codon usages in a hidden Markov model to improve the prediction of protein-coding region in short reads. The performance of…

FrameD
Desktop
Web

FrameD

A program that predicts coding regions in prokaryotic and matured eukaryotic…

A program that predicts coding regions in prokaryotic and matured eukaryotic sequences. Initially targeted at gene prediction in bacterial GC rich genomes, the gene model used in FrameD also allows…

FSFinder
Web
Desktop

FSFinder Frameshift Signal Finder

Searches the genomic sequences or mRNA sequences for frameshifting sites.…

Searches the genomic sequences or mRNA sequences for frameshifting sites. FSFinder is a web-based program capable of finding -1 frameshift sites for most known genes and +1 frameshift sites for two…

MetaGeneTack
Desktop
Web

MetaGeneTack

Addresses the challenging question of predicting frameshifts in protein-coding…

Addresses the challenging question of predicting frameshifts in protein-coding regions of metagenomic sequences without extrinsic knowledge. An advantage of ab initio approach is the ability to…

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