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Libraries/frameworks | Mass spectrometry-based proteomics

Open-source frameworks and libraries play an important role in the development and growth of the new MS-based proteomics tools. As a matter of fact, they can greatly simplify the implementation of the basic features needed in most tools and allow…
OpenMS
Desktop

OpenMS

Allows to manage and analyse Liquid chromatography coupled to mass spectrometry…

Allows to manage and analyse Liquid chromatography coupled to mass spectrometry (LC-MS) data. OpenMS is a programming library and tool collection integrated into full-featured workflow systems, such…

Ursgal
Desktop

Ursgal

Performs complex multi-dimensional data analysis in terms of parameter…

Performs complex multi-dimensional data analysis in terms of parameter variation. Ursgal is an unified interface that makes computational proteomics unified and scriptable, offering the possibility…

ms-data-core-ap…
Desktop

ms-data-core-api

A free, open-source library for developing computational proteomics tools and…

A free, open-source library for developing computational proteomics tools and pipelines. The Application Programming Interface, written in Java, enables rapid tool creation by providing a robust,…

SpeckTackle
Desktop

SpeckTackle

A custom-tailored JavaScript charting library for spectroscopy in life…

A custom-tailored JavaScript charting library for spectroscopy in life sciences. The visualisation library SpeckTackle is freely available and targeted at life science communities that deal with…

Galaxy-P
Desktop

Galaxy-P

A multiple 'omics' data analysis platform with particular emphasis on…

A multiple 'omics' data analysis platform with particular emphasis on mass spectrometry based proteomics. Galaxy-P is an extension of the original web-based Galaxy framework.

eMZed
Desktop

eMZed

An open source framework for rapid and interactive development of LCMS data…

An open source framework for rapid and interactive development of LCMS data analysis workflows in Python. The goal was to establish a unique framework with comprehensive basic functionalities that…

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