Frealign pipeline

Frealign specifications


Unique identifier OMICS_15608
Name Frealign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Shell (Bash)
Computer skills Advanced
Version 9.11
Stability Stable
Source code URL
Maintained Yes


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  • person_outline Nikolaus Grigorieff <>

Publications for Frealign

Frealign IN pipeline

PMCID: 5431180
PMID: 28469174
DOI: 10.1038/s41598-017-01568-9

[…] by eman34. em map was calculated and further refined using ihrsr real-space processing package29. 4,500 particles were included in the final reconstruction. the b-factor was estimated using frealign and −150 å2 was used to scale amplitudes. the 9.2 å resolution was calculated by fourier shell correlation (fsc) 0.5 criterion. a model vs. map fsc was also calculated, which gives […]

Frealign institution(s)
Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA

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