freeIbis specifications


Unique identifier OMICS_02217
Name freeIbis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format INT, CIF with Bustard reads
Biological technology Illumina
Operating system Unix/Linux
Programming languages C, Python
Computer skills Advanced
Stability Stable
Maintained Yes


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freeIbis citations

PMCID: 5312299

[…] was performed on illumina miseq and hiseq instruments with parameters outlined in detail in supplementary table s1. base calling was performed by bustard (illumina corp.) for miseq data and by freeibis [37] for hiseq data. illumina adapters were removed, putative chimeric sequences were flagged as failing quality control and overlapping paired reads were merged using leehom […]

PMCID: 4505326

[…] described46. the libraries were sequenced as 125 bp paired-end run for r. multicaudata and 96 bp paired-end run for trypanobia sp., both on an illumina hi-seq 2000. base calling was performed with freeibis47, adaptor and primer sequences were removed using leehom48, and reads with low complexity and false paired indices were discarded. raw data of all libraries were trimmed by removing […]

freeIbis institution(s)
Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
freeIbis funding source(s)
The Max Planck Society

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