FreePSI specifications


Unique identifier OMICS_24040
Name FreePSI
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A reference genome with exon boundary annotation and a set of RNA-seq reads.
Output data The PSI values of all annotated exons.
Operating system Unix/Linux
Programming languages C++, Python, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.3
Stability Stable
Jellyfish, Scipy, Numpy
Source code URL
Maintained Yes




No version available


  • person_outline Tao Jiang <>

Publication for FreePSI

FreePSI institution(s)
MOE Key Laboratory of Bioinformatics; Bioinformatics Division and Center for Synthetic & Systems Biology, TNLIST, Tsinghua University, Beijing, China; Department of Computer Science and Technology, Tsinghua University, Beijing, China; Department of Statistics, Stanford University, Stanford, CA, USA; Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China; Department of Computer Science and Engineering, University of California, Riverside, CA, USA
FreePSI funding source(s)
Supported by US National Science Foundation [DBI-1262107, IIS-1646333]; National Natural Science Foundation of China [61472205]; Youth 1000-Talent Program of China; Ningbo Science and Technology Discovery Grant [2014B82014].

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