FriPan specifications

Information


Unique identifier OMICS_03550
Name FriPan
Interface Web user interface
Restrictions to use None
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

FriPan review

star_border star_border star_border star_border star_border
star star star star star

Korin Albert

star_border star_border star_border star_border star_border
star star star star star
Web
I use FriPan to visualize the pangenome output from Roary. It's easy once you adjust your Roary data using roary2fripan (https://github.com/kwongj/roary2fripan). This is web-based in the sense that you view it in a web browser, but it requires more knowledge to set up than a website like RAST. But once you set it up, you can view a heatmap-like figure of the genomes in your pangenome and then zoom in on specific loci with strain differences.