FSL statistics

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Citations per year

Number of citations per year for the bioinformatics software tool FSL
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Tool usage distribution map

This map represents all the scientific publications referring to FSL per scientific context
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Associated diseases

This word cloud represents FSL usage per disease context
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Popular tool citations

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Protocols

FSL specifications

Information


Unique identifier OMICS_20572
Name FSL
Alternative name FMRIB Software Library
Software type Framework/Library
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C#, C++
License Other
Computer skills Advanced
Version 5.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/FMRIB_Software_Library

Subtools


  • Atlases
  • Atlasquery
  • BASIL
  • BayCEST
  • BET
  • BIANCA
  • Cluster
  • Dual Regression
  • eddy
  • FABBER
  • FAST
  • FDR
  • FDT
  • FEAT
  • FIRST
  • FLIRT
  • FLOBS
  • FNIRT
  • fsl_anat
  • FSL-VBM
  • FSLeyes
  • FSLUTILS
  • FSLView
  • FUGUE
  • GLM
  • MCFLIRT
  • MELODIC
  • Miscvis
  • MIST
  • Mm
  • MSM
  • POSSUM
  • randomize
  • SIENA
  • SIENAX
  • SUSAN
  • TBSS
  • topup
  • VERBENA

Versioning


No version available

Publications for FMRIB Software Library

library_books

FSL.

2012 Neuroimage
PMID: 21979382
DOI: 10.1016/j.neuroimage.2011.09.015

FSL citations

 (992)
library_books

Diagnostic Validity of an Automated Probabilistic Tractography in Amnestic Mild Cognitive Impairment

2018
PMCID: 5953013
PMID: 29739127
DOI: 10.9758/cpn.2018.16.2.144

[…] PM) has well-known problem of arbitrary spatial smoothing extent, which unavoidably affect the group differences. Recently, many DTI studies have applied tract-based spatial statistics (TBSS) in FSL (FMRIB Software Library, http://www.fmrib.ox.ac.uk/fsl/) software, which can overcome SPM problem, using an algorithm aligns each individuals mean FA to a common standard space in registration process. […]

library_books

Increasing Lateralized Motor Activity in Younger and Older Adults using Real time fMRI during Executed Movements

2018
Neuroscience
PMCID: 5953409
PMID: 28214578
DOI: 10.1016/j.neuroscience.2017.02.010

[…] BOLD fMRI data for each subject were analyzed off-line using tools from the FMRIB software library (http://www.fmrib.ox.ac.uk/fsl). Pre-processing of the images included, motion correction spatial smoothing using a Gaussian kernel of 5-mm full width at half maximum (FWHM), an […]

call_split

Postnatal Microstructural Developmental Trajectory of Corpus Callosum Subregions and Relationship to Clinical Factors in Very Preterm Infants

2018
Sci Rep
PMCID: 5954149
PMID: 29765059
DOI: 10.1038/s41598-018-25245-7
call_split See protocol

[…] DTI data were transferred to an offline workstation for further image processing and analysis. We pre-processed all images using FSL 5.0 software of FMRIB Software Library (Analysis Group, FMRIB, Oxford, UK) and DTIStudio 3.0.2 of MRI Studio (Johns Hopkins University, Baltimore, MD). Briefly, we converted raw DTI DICOM data into analyze format usi […]

call_split

Altered attentional control over the salience network in complex regional pain syndrome

2018
Sci Rep
PMCID: 5945627
PMID: 29748588
DOI: 10.1038/s41598-018-25757-2
call_split See protocol

[…] TR = 1,900 ms; TE = 2.49 ms; FA = 9°; FOV = 230 mm2; slice thickness = 0.9 mm; 208 contiguous sagittal slices.Functional image data preprocessing was performed using the modules contained within the FMRIB Software Library tools (FSL, http://www.fmrib.ox.ac.uk/fsl). The standard preprocessing steps consisted of motion correction using multi-resolution rigid body co-registration, brain extraction u […]

library_books

Automatic brain tissue segmentation based on graph filter

2018
BMC Med Imaging
PMCID: 5941431
PMID: 29739350
DOI: 10.1186/s12880-018-0252-x

[…] ents.The performance of the proposed approach is compared with other state-of-the-arts, including two voxel-wise methods and one promising supervoxel based methods. The two voxel-wise methods are the FMRIB Software Library v5.0 (FSL) [] and Statistical Parametric Mapping (SPM8) [], which are widely used in the neuroscience community. The FSL software employs expectation maximization algorithm with […]

call_split

Distributed representation of pelvic floor muscles in human motor cortex

2018
Sci Rep
PMCID: 5940845
PMID: 29740105
DOI: 10.1038/s41598-018-25705-0
call_split See protocol

[…] ups, we preprocessed each participant’s fMRI data using the FMRIB Expert Analysis Tool (FEAT, http://www.fmrib.ox.ac.uk), which included skull extraction using the brain extraction tool (BET) in FSL (FMRIB Software Library), slice timing correction, motion correction, and spatial smoothing using a Gaussian kernel with full-width half-maximum of 5 mm and nonlinear high-pass temporal filtering (100  […]


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FSL institution(s)
FMRIB Centre, Nuffield Department of Clinical Neurosciences, University of Oxford, UK

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