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Protocols

FSRD specifications

Information


Unique identifier OMICS_21046
Name FSRD
Alternative name Fungal Stress Response Database
Restrictions to use None
Database management system MSSQL Server
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Márton Miskei

Publication for Fungal Stress Response Database

FSRD citations

 (4)
library_books

Genomic Analyses of Cladophialophora bantiana, a Major Cause of Cerebral Phaeohyphomycosis Provides Insight into Its Lifestyle, Virulence and Adaption in Host

2016
PLoS One
PMCID: 5003357
PMID: 27570972
DOI: 10.1371/journal.pone.0161008

[…] SidD gene clusters were retrieved from the sequenced genome using Artemis v12.0 sequence viewer []. Stress responsive genes and pathogenicity-associated genes were predicted by BLASTP search against fungal stress response database (FSRD) and pathogen-host interaction database (PHI-base). Amino acid sequences with e-value threshold ≤1e-5, alignment length over 70% of its own length and over 50% ma […]

call_split

Insight into different environmental niches adaptation and allergenicity from the Cladosporium sphaerospermum genome, a common human allergy eliciting Dothideomycetes

2016
Sci Rep
PMCID: 4886633
PMID: 27243961
DOI: 10.1038/srep27008
call_split See protocol

[…] combined with the 500-bp Illumina sequenced reads for further processing. Genes associated with stress responses were identified by performing a local BLASTP search against a database built from the Fungal Stress Response Database (FSRD, http://internal.med.unideb.hu/fsrd) using the criteria of e-value threshold ≤1e-5, identity exceeding 50% and subject coverage exceeding 70%.The protein sequence […]

library_books

Computational Prediction of Effector Proteins in Fungi: Opportunities and Challenges

2016
Front Plant Sci
PMCID: 4751359
PMID: 26904083
DOI: 10.3389/fpls.2016.00126

[…] this context, manual curation and the continuous use of the growing number of experimentally validated protein database should lead to more accurate predictions. In an effort to develop a library of fungal stress response database (FSRD), about 2000 publications, sorted systematically from the PubMed entries, have been used to obtain and define over 2000 stress-related proteins in fungi (). For t […]

library_books

Genome analysis of Daldinia eschscholtzii strains UM 1400 and UM 1020, wood decaying fungi isolated from human hosts

2015
BMC Genomics
PMCID: 4650942
PMID: 26581579
DOI: 10.1186/s12864-015-2200-2

[…] response genes were identified by BLASTP search against local databases, which were downloaded and built from the pathogen-host interaction database (PHI-base) [] and fungal stress response database (FSRD) [] respectively, with criteria of BLASTP e-value threshold of less than or equal to 1e-5, percentage identity of more than 50 % and subject coverage of more than 70 %. Putative transposon elemen […]


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FSRD institution(s)
Department of Medicine, Medical and Health Science Center, University of Debrecen, Hungary; Institute of Horticulture, University of Debrecen, Hungary; Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungary; Mycology Group of the Hungarian Academy of Sciences, Institute of Plant Protection, Hungary; Department of Microbial Biotechnology and Cell Biology, University of Debrecen, Hungary
FSRD funding source(s)
Supported by grants of the Hungarian Scientific Research Fund [K76067, K78399, K100464]; Janos Bolyai Research Fellowship award and TAMOP project [4.2.1./B-09/1/KONV- 2010-0007] which is co-financed by the European Union and the European Social Fund.

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