FStitch statistics

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Citations per year

Number of citations per year for the bioinformatics software tool FStitch
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Tool usage distribution map

This map represents all the scientific publications referring to FStitch per scientific context
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Associated diseases

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Popular tool citations

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FStitch specifications

Information


Unique identifier OMICS_10575
Name FStitch
Alternative name Fast Read Stitcher
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data FStitch requires a BedGraph file.
Operating system Unix/Linux
Programming languages C++
Parallelization OpenMP
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Joseph Azofeifa

Publication for Fast Read Stitcher

FStitch citations

 (2)
library_books

Genome wide dose dependent inhibition of histone deacetylases studies reveal their roles in enhancer remodeling and suppression of oncogenic super enhancers

2017
Nucleic Acids Res
PMCID: 5829637
PMID: 29240919
DOI: 10.1093/nar/gkx1225

[…] The FStitch algorithm () was used to identify genomic regions enriched with H3K9ac and –K27ac signal from HCT116 ChIP-seq experiments. In order to acquire uniform FStitch signal calls across experiments t […]

library_books

A generative model for the behavior of RNA polymerase

2016
Bioinformatics
PMCID: 5942361
PMID: 27663494
DOI: 10.1093/bioinformatics/btw599

[…] our model on publicly available biological data. To perform model inference of RNAP location requires an interval [a,b] where GRO-seq read mapping data (D) can be collected. To this end, we utilized Fast Read Stitcher (FStitch) that implements a maximum entropy Markov model to segment the genome into ‘transcribed regions’ (, ). In a HCT116 GRO-seq dataset (), FStitch classified 19 709 transcribed […]


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FStitch institution(s)
University of Colorado, Boulder, CO, USA

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