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FSTVAL specifications

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Unique identifier OMICS_24016
Name FSTVAL
Interface Web user interface
Restrictions to use None
Input data A genome sequence.
Input format FASTA, FASTQ, PHD
Programming languages Javascript, Python
Computer skills Basic
Maintained No

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Publication for FSTVAL

FSTVAL citations

 (2)
library_books

Whole genome resequencing and transcriptomic analysis of genes regulating anthocyanin biosynthesis in black rice plants

2018
3 Biotech
PMCID: 5801106
PMID: 29430376
DOI: 10.1007/s13205-018-1140-3

[…] 0.05) using the Pathway Studio® software (Ariadne Inc., Rockville, MD, USA). To predict the functions of the selected genes, we identified the most likely chromosomal positions of each gene using the FSTVAL program (GGBio Inc., Yongin, Korea). We found the best mapping position using the BLASTN tool (https://blast.ncbi.nlm.nih.gov/) with an e value cutoff of ≤ 1.0 × 10−5. We anchored each gene pos […]

library_books

A Pepper MSRB2 Gene Confers Drought Tolerance in Rice through the Protection of Chloroplast Targeted Genes

2014
PLoS One
PMCID: 3948683
PMID: 24614245
DOI: 10.1371/journal.pone.0090588

[…] -DNA flanking regions from 24 independent T0 transgenic lines (19 lines from MSRB2-Bar, and 5 lines from MSRB2-mini) were isolated by the adaptor-ligation PCR method , sequenced, and then analyzed by FSTVAL, a transgene flanking sequence validator (). The lines 8 and 23, which harbor the transgenes as an intergenic single copy from the MSRB2-Bar vector, and a line harboring the MSRB2-mini vector […]


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FSTVAL institution(s)
Division of Bioscience and Bioinformatics, Myongji University, Yongin, Kyonggido, South Korea; Genomics Genetics Institute, GreenGene BioTech Inc. Yongin, Yongin, Kyonggido, South Korea; Upland Crop Research division, National Institute of Crop Science, Suwon, South Korea; Graduate School of Biotechnology, Kyung Hee University, Yongin, South Korea; National Academy of Agricultural Science, Rural Development Administration, Suwon, South Korea
FSTVAL funding source(s)
Supported by grants from the Next-Generation BioGreen 21 Program (YKK, grant no. PJ008070 and PJ008185; BHN, grant no. PJ008145), RDA of the Republic of Korea and by the Korea Institute of Planning and Evaluation of Food, Agriculture, Forestry and Fisheries (BHN, grant no. 110024-03-1-SB010) and by BK21.

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