FSWM specifications

Information


Unique identifier OMICS_14815
Name FSWM
Alternative name Filtered Spaced Word Matches
Interface Web user interface
Restrictions to use None
Input data Multi DNA sequences
Input format FASTA
Output data The results are presented in as a spaced-word histogram.
Computer skills Basic
Stability Stable
Source code URL http://fswm.gobics.de/files/fswm.tar.gz
Maintained Yes

Maintainer


  • person_outline Chris-André Leimeister <>

Information


Unique identifier OMICS_14815
Name FSWM
Alternative name Filtered Spaced Word Matches
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of genomic sequences
Input format FASTA
Output data Generates a distance matrix with the pairwise distances between the input sequences.
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Chris-André Leimeister <>

Publication for Filtered Spaced Word Matches

FSWM institution(s)
Department of Bioinformatics, University of Göttingen, Institute of Microbiology and Genetics, Göttingen, Germany; University of Göttingen, Center for Computational Sciences, Göttingen, Germany
FSWM funding source(s)
This work was supported by a grant from International Max Planck Research School Molecular Biology, Göttingen.

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