FTProd specifications

Information


Unique identifier OMICS_22043
Name FTProd
Alternative name binding site comparison across multiple structures
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Requirements
VDM
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Rommie Amaro

Additional information


https://amarolab.ucsd.edu/ftprod/tutorial/01

Publication for binding site comparison across multiple structures

FTProd citations

 (2)
library_books

An Introduction to B Cell Epitope Mapping and In Silico Epitope Prediction

2016
J Immunol Res
PMCID: 5227168
PMID: 28127568
DOI: 10.1155/2016/6760830

[…] le proteins, are ideal for crystallography. However, the X-ray crystallography is limited by quality of cocrystals and electron density of the antibody []. Recently developed freely available program FTProd can be used as computational alternative to expensive and time consuming X-ray crystallography []. Nuclear magnetic resonance (NMR) has also potential to replace traditional X-ray crystallograp […]

library_books

Drug Like Protein–Protein Interaction Modulators: Challenges and Opportunities for Drug Discovery and Chemical Biology

2014
Mol Inform
PMCID: 4160817
PMID: 25254076
DOI: 10.1002/minf.201400040

[…] d to pinpoint a region that can be explored by structure-based virtual screening approaches and for hotspot prediction while if multiple structures are available (or obtained via molecular dynamics), FTProd[] could be applied. In fact, it has been shown that when a main hotspot region at a protein–protein interface has a concave topology, with one or two additional hot-spots close enough to be rea […]

FTProd institution(s)
Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
FTProd funding source(s)
Supported by the National Institutes of Health (1-DP2-OD007237, in part).

FTProd reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review FTProd