FUCHS specifications

Information


Unique identifier OMICS_12840
Name FUCHS
Alternative name FUll CHaracterization of circular RNA using RNA Sequencing
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format BAM, BED
Output format TXT, BED
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
PySam, Pybedtools, Numpy, R
Source code URL https://codeload.github.com/dieterich-lab/FUCHS/zip/v0.2.0
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Franziska Metge

Publication for FUll CHaracterization of circular RNA using RNA Sequencing

FUCHS citation

library_books

FUCHS—towards full circular RNA characterization using RNAseq

2017
PeerJ
PMCID: 5333540
PMID: 28265491
DOI: 10.7717/peerj.2934

[…] eclampsia ().To expand our understanding of possible roles of circular RNAs, we propose a new pipeline that aims to fully characterize candidate circRNA sequence and structure from RNAseq data—FUCHS: FUll CHaracterization of circular RNA using RNA-Sequencing. Currently, most computational prediction pipelines only use RNA-seq reads to identify back-splicing events. FUCHS extends this concept by co […]

FUCHS institution(s)
Max-Planck Institute for Biology of Ageing, Cologne, Germany; Max Planck Genome Centre, Cologne, Germany; Department of Internal Medicine III, Klaus Tschira Institute for Integrative Computational Cardiology, Heidelberg, Germany; German Centre for Cardiovascular Research, Heidelberg, Germany
FUCHS funding source(s)
Funding was provided by DFG Priority Program SPP1738.

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