FunChIP specifications
Information
| Unique identifier | OMICS_20811 |
|---|---|
| Name | FunChIP |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | The output of a peak call and the corresponding alignment files. |
| Input format | BED, BAM |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| License | Artistic License version 2.0 |
| Computer skills | Advanced |
| Version | 1.6.0 |
| Stability | Stable |
| Requirements |
methods, stats, RColorBrewer, parallel, graphics, GenomicRanges, Rsamtools, GenomeInfoDb, fda, grDevices, GenomicAlignments, Rcpp, foreach, R(>=3.2), shiny, doParallel
|
| Maintained | Yes |
Download
Versioning
Add your version
Maintainer
- person_outline Marco J. Morelli <>
Publication for FunChIP
2017 Bioinformatics
PMID: 28398543
DOI: 10.1093/bioinformatics/btx201
FunChIP institution(s)
MOX—Department of Mathematics, Politecnico di Milano, Milan, Italy; Center for Genomic Science of [email protected], Fondazione Istituto Italiano di Tecnologia, Milan, Italy; Department of Experimental Oncology, European Institute of Oncology, Milan, Italy
FunChIP funding source(s)
Supported by the “Data-Driven Genomic Computing (GenData 2020)” PRIN project (2013–2015) and carried out within the “Genomic Computing Project”, a research program involving the European Institute of Oncology; the Istituto Italiano di Tecnologia and the Politecnico di Milano.
FunChIP reviews
Be the first to review FunChIP