FunChIP specifications
Information
Unique identifier | OMICS_20811 |
---|---|
Name | FunChIP |
Software type | Application/Script |
Interface | Command line interface |
Restrictions to use | None |
Input data | The output of a peak call and the corresponding alignment files. |
Input format | BED, BAM |
Operating system | Unix/Linux, Mac OS, Windows |
Programming languages | R |
License | Artistic License version 2.0 |
Computer skills | Advanced |
Version | 1.6.0 |
Stability | Stable |
Requirements |
methods, stats, RColorBrewer, parallel, graphics, GenomicRanges, Rsamtools, GenomeInfoDb, fda, grDevices, GenomicAlignments, Rcpp, foreach, R(>=3.2), shiny, doParallel
|
Maintained | Yes |
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Maintainer
- person_outline Marco J. Morelli <>
Publication for FunChIP
2017 Bioinformatics
PMID: 28398543
DOI: 10.1093/bioinformatics/btx201
FunChIP institution(s)
MOX—Department of Mathematics, Politecnico di Milano, Milan, Italy; Center for Genomic Science of [email protected], Fondazione Istituto Italiano di Tecnologia, Milan, Italy; Department of Experimental Oncology, European Institute of Oncology, Milan, Italy
FunChIP funding source(s)
Supported by the “Data-Driven Genomic Computing (GenData 2020)” PRIN project (2013–2015) and carried out within the “Genomic Computing Project”, a research program involving the European Institute of Oncology; the Istituto Italiano di Tecnologia and the Politecnico di Milano.
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