FunChIP specifications


Unique identifier OMICS_20811
Name FunChIP
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The output of a peak call and the corresponding alignment files.
Input format BED, BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.6.0
Stability Stable
methods, stats, RColorBrewer, parallel, graphics, GenomicRanges, Rsamtools, GenomeInfoDb, fda, grDevices, GenomicAlignments, Rcpp, foreach, R(>=3.2), shiny, doParallel
Maintained Yes




No version available


  • person_outline Marco J. Morelli

Publication for FunChIP

FunChIP institution(s)
MOX—Department of Mathematics, Politecnico di Milano, Milan, Italy; Center for Genomic Science of [email protected], Fondazione Istituto Italiano di Tecnologia, Milan, Italy; Department of Experimental Oncology, European Institute of Oncology, Milan, Italy
FunChIP funding source(s)
Supported by the “Data-Driven Genomic Computing (GenData 2020)” PRIN project (2013–2015) and carried out within the “Genomic Computing Project”, a research program involving the European Institute of Oncology; the Istituto Italiano di Tecnologia and the Politecnico di Milano.

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