FunciSNP specifications


Unique identifier OMICS_08577
Name FunciSNP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.10.0
Stability Stable
Requirements ggplot, TxDb.Hsapiens.UCSC.hg19.knownGene,
Maintained Yes


  • Animals
    • Homo sapiens


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  • person_outline Simon G. Coetzee <>

FunciSNP article

FunciSNP citation

PMCID: 4200523

[…] (illumina), comparing the deleted cells to parental hct116 cells., to identify snps correlated with the 25 crc tag snps and those that overlap with chromatin biofeatures, we use the r package for funcisnp21, which is available in bioconductor. we used h3k27ac chip-seq data from hct116 cells and sigmoid colon tissue and as biofeatures we used exon, intron, utr and tss annotations generated […]

FunciSNP institution(s)
Norris Cancer Center, Department of Preventive Medicine, Epigenome Center and Department of Urology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA

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