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FunCluster specifications

Information


Unique identifier OMICS_19187
Name FunCluster
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.09
Requirements
R(≥2.10), cluster, Hmisc
Source code URL https://cran.r-project.org/src/contrib/FunCluster_1.09.tar.gz
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainers


  • person_outline Corneliu Henegar
  • person_outline Sophie Rome
  • person_outline Hubert Vidal
  • person_outline Karine Clement

Additional information


http://corneliu.henegar.info/FunCluster.htm

Publication for FunCluster

FunCluster citation

library_books

Knowledge based matrix factorization temporally resolves the cellular responses to IL 6 stimulation

2010
BMC Bioinformatics
PMCID: 3009690
PMID: 21118515
DOI: 10.1186/1471-2105-11-585

[…] we compared the outcome of grade with standard methods. as there is no established matrix factorization technique that incorporates prior knowledge, we employed pca [], k-means clustering [] and funcluster [], a clustering method that incorporates gene ontology information into the clustering task., to test the biological findings obtained by grade, we applied a similar approach as proposed […]


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FunCluster institution(s)
Inserm, U755 Nutriomique, Paris, France; Pierre and Marie Curie Paris 6 University, Faculty of Medicine Les Cordeliers, Paris, France; AP-HP, Hotel-Dieu Hospital, Nutrition Department, Paris, France; UMR Inserm U449/INRA U1235, Lyon, France; Human Nutrition Research Centre, Lyon, France; Lyon 1 University, Laennec Medical Faculty, Lyon, France; LIM&BIO EA3969, Paris Nord University, Bobigny, France
FunCluster funding source(s)
Supported by the Institut National de la Sante et de la Recherche Medicale (INSERM), and the Assistance Publique – Hopitaux de Paris; grant from Paris VI University (BQR, bonus quality research), and from INSERM (PRNH, Research Program on Human Nutrition); INSERM, ADR Paris VI, Saint-Antoine, Paris, grant from the Assistance Publique – Hopitaux de Paris.

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