FMAP specifications

Unique identifier:
OMICS_13223
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Output data:
FMAP generates the following outputs: (i) an alignment of reads to a reference database, (ii) the abundances of gene families, and (iii) enriched operons and pathways from the differentially abundant (DA) gene analysis.
Programming languages:
Perl, R
Computer skills:
Advanced
Source code URL:
http://www.cpan.org/authors/id/F/FA/FANGLY/Statistics-R-0.33.tar.gz
Name:
Functional Mapping and Analysis Pipeline
Interface:
Command line interface
Input data:
FMAP takes raw sequence data.
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

versioning

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FMAP distribution

download

FMAP support

Documentation

Maintainer

  • Yang Xie <>

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Publications

Institution(s)

Department of Clinical Sciences, Quantitative Biomedical Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, TX, USA; Center for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA

Funding source(s)

Funding was provided by the National Institutes of Health/National Cancer Institute (5R01CA152301 and 1R01CA172211) and by the Cancer Prevention and Research Institute of Texas (RP150596).

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