FuncTree specifications

Information


Unique identifier OMICS_18071
Name FuncTree
Interface Web user interface
Restrictions to use None
Input data A list of KO composition or a list of relevant genes.
Output data A functional tree image.
Output format SVG, PNG
Programming languages Javascript
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Takuji Yamada <>

Publication for FuncTree

FuncTree in publication

PMCID: 4778626
PMID: 26981372
DOI: 10.1016/j.gdata.2015.11.028

[…] functional categories of the kegg database (kyoto encyclopedia of genes and genomes). enriched functional categories were identified by fisher's exact test using r version 2.15 and visualized using functree (http://bioviz.tokyo/functree/), an online visualization tool for kegg pathways., to find atf7-regulated genes, we compared the expression profiles of macrophages from wild-type and atf7−/− […]


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FuncTree institution(s)
Department of Biological Information, Tokyo Institute of Technology, Tokyo, Japan; Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan
FuncTree funding source(s)
Supported by JSPS KAKENHI (Grant-in-Aid for Young Scientists, Grant Number 25710016).

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